Gene detail

Detailed information of XP_068722741.1 in Montipora capricornis

Genomic Location: chr10:47628628...47633653
NR annotation: XP_029204255.2, uncharacterized protein LOC114968280 [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_068866640.1

GCATCTGGTTAAACCTTCCAGTTGGGCTTCTAAATAGCCAGTAATTAACAATGATTTGCCaaaggcaaggtgaatatcggGGAATAAAAACCAAGATGAAGAGGAGGTTTTTTCGATGAAGTCTAGGTTTTtccaaataatcacctatgtaaaattattatacttaagcagtagaggacgttttccatgtttccatagcATATAGCAGAATCCTCCCAACTTCCCTGattgtttagatgaggctatggaaacatggaaaaaggtcctctattgcttttataaaatatttctcaaagataatttcgagaaatgaaggaaacaaatgaagaaaaattcttgattgaaacagattttcttgatacacactCATATTTCCTATAGGCAAATCAAAATGCGCGTCTGACagcatataaccaatcaaaatttgcgtgatgtcacagccatgtTTCCAGACTcttatctaaacacagctattgaccaatgagagtgcatgtactatcctaattattattttataatttaacaatagtaattaattattattcacctcTAGTCAGGCTCAGTGAATATTTTGTCTCGGGTTTTATTCAACGATATTCACTGAGCCTCaggtgaataaattattataaattattagtataattacataggtgattatttaaaaatgtgcattttctttaaaacaatcaatTTCTTTGTCAGTGTCACCTTGACAAAATGGgttgtggccattttgaaaaactgcTTAATAGGTGATTATCatgtaataatcacctcaagtgcaatcAATCAGTACAGAGAATTTTAattaatcacctatgtaattatactactaataacatgggtgacaaattactccttaattttaacgcgaaatttcagcgttaatttataatttcacaacTTCATATAGTgctaaaatggcgtccaggtttgaaaattaaggagtaatttgtcaccatgttattaatagctaatcaaatggtatacccgtgaaattagggaataatttcacttgcgttttgtccaaaatcaagtaatttccctcgcctaaaggctcgggaaattatttgaatttggacaaaacgcgcatgaaattattccctaatttcatgcgtcaccatttgattacccatactaataatattattattgatctGCTTCCTGACTGTCAGGGCTCTTAAAATTTGTCTACTGTAGTTTGCTTCTCTTTTGTTTCATAATTTGGCCCTGAAAAACCCTAACAAGAGTAGCCAATTTGAGTTTTTACATGTATCTGTCCATTACAATAGGTTGatatgattatcattatcagGGCAATTTGGGATGTTGAAAAAGCGTGTGTACAGAGTATCTGGCCAACTGTTCAACATCACTGCTTTACATTAAAAATGCTTTATGTAAATTGAAGtggtcagaaaaattaataaattgtcAAAGCTCAGAATGTGTGCTACTGCATGTATCcaatacaataaaaatatgAATCGATTCAGTAATAATCAATATGAATCAAGCAAAAGTTTGGAGATTTCTTTCTTAAAATCCTTGTGCAAAAAGCATTCCATTATTTGATAAGGCTATTACAGCGTGACTCGATCAAACAGAAAGAACTCTTACTCTTACTACTCCACCTTTGTCTACCTTTGATTTAGTGAACACTATTACTAACAAATGGATTATTTTAGCAATAGCTAGGTTTAGCTCAACAAGGAAACTAGACAGTGATTTCAGACACAGAGGCTCAAAAGTCTTTGTGGATATGTTAATGccgacatagtttttcagtgagtgcttaacccattgacttccaggggttccccatttaAGAGTAAACtcgtctagcgttagacagagtaaaatactctggcattaaatagagtaaaatactgtctagtctggccggtttcagcCGGTTtgggcgtcaaagggttaaattaaggAAGGTAAATAGGCCAGTAACTGGCACCTGGCAATATCCCTGATAATGAAGATGACCATGTTTGATTGTATGATGGACTTTTATAGAACTCCATTCTGTCAGCAACAAACTGGCCGAAACTGGGTAATTAACTTATTCCAGCACCTCACCCAAATTGAATATCAACAAAATTACTACAGGGTAGTTAAATCTAAAATCAGTGGAGGATTTGGAATATCAAAGATAATACAATCCAGAGGTCTCTGGTGGTACTGTTGGCACGAGAGGCATAAGCCGCATGGAGAATGGGGAGGGATAGCACCCCTCCCCATTCACTGCTTGGCTCCGCCGCTTGATGTATTTGCCCCTTCCGCCAACAATTCCACCAGTGAGGCCCTCCCAGGTGGGATCCTTGTTctctttaaatatttgcttgtgttcccttgttcttcaaattactttcaaacttgttcctaGCTTTTTGATccttaaaattgtttttaattatttttgttccctttttccctaaaatatttttgcattgtTCCCCACTTCAAATTATCCATTTTATCTTCTTCCCCAAAAGCCCTGGGAGGGCCCCAGGTCTTCACACCATTACTTTTTATCATAAATTTAcctttttgttgaattttaattaagaaataaCGGAACAACTGAATTACTCGAGACATGCATGTGAGCAGACTGTTAACGTAACCCTGTATGAATCACAAGATAAAAATAGCTGAACCTGTACAGCGGTGTTTGTCGCGGTCGCCACTGTTTTGTTGATATCTTTCGCGGCAAGTACATGGCCATTATCTAGTTTATCTTGTTTTTGAACTGAAATTAGCTCCTTGATCAGTAGCCAAGAAGCGAAGCCGCGAACAGGTATGCGCTAATCAAGTTGCCAATATCAAATGGGAAACAGGTTGACTTTCACGAGGTCACGCACCAAAGTTGATAAATCCTCGGATTTGATTCTTCCCTGTCGCCCGATCCAACCTTTGAGAGATATCAACCATGGGGCTACGAGTTCTAATTTTCCTCGGATTATCGCCCAACTGCTTCATAATCGCAGTTCGAGATCAAACATTGGATTGGGTGACGAGTTAGAGGAAGAGATCCACTGCTGTACATTTTCTCCAGACGACGAATCACTCCTTGTAACTTGCTCGACACCTTGCGGACCGAGCTTTAGATCTGACGAAGGTCGCGGCCATTTTAGAGTGTTTGACATCAAATCAGGCTCTTGTAGGAAGGAAATTCTCACTCATAACTCCCAAGAGTGCGATATTTCAGCGGACGGCGACCTTATCACCTTTATCACTAACTCTGGAAGAGGAGAAGTGGCTCTGGTTAAACGAAGCCGTGATTCTAGAAGCGGTATTGAAGAAAGAGTCGACAAATTTCAGCCCAGTTGTACTGGAATAACAGGACAAACTCTCTGTTCTAAGTTTTCACCAGATGGTACGCACATAGCGAGCGCCTCGTCGTTAGATTTCCACAGCATCAGAGAAACCAATGAGTTGCGATTATGGAATGTGAAGTCCATGCAGACAGTGAAGAGGATCGTCTTGCGCGATGTAACAGATTTTTGTGGCTTTGTCACAAGTTGTGAGTTTTCTCCCGATGGTCAGTATATCGCTGTTACTACTTCCCAGGAACAACTGTGTATCCTGAAGAGCAAGAATTTCGACATCGTCTCCGTTTTGAGAAAGCGATGTCGAGGAAATAGATGCTGGTGTGTTTTCAATCCAAGACGGAAATGCGAAGTGCTGGCTTGTTGTTTACAGGACGGACGCGTAGAGATCTGGAAAAAACTTGATTATCCGAACAGTTGTGAAGTAAAGTACATTTGTGAAAAAGAACGCAAAGTGTCTTCTTTAAGGCGACTTTATTCTTGTAGCTATTCCCCTGATGGTCTGATGCTCACTGTGGGAACATCTGATGCAAATATTCTTGTCTTGGATTCTGACTCGCTGGACACCTTATTTTGCCTTGACTGCAAATCAGAATCAATTCCAGATTCTTTTAGACCAAGAGTTCAAAATGCTACGGTCCACTGTATTGCATTCTCAAAATCACAGCAATACCTTGCTGCAGGCTACAGTGATGGACTGGTGAGGATTTGGGCTATGCCTATCCAGTTTGATTTGAAGCATTTATGCCGAGTGGTCATCTTACACAATGTCCCAGCTAGTAAAATTGGTTCCCTTCCGATCCCCAGTAGTATTAAGGCATACATTCTAAACAGGTGAAAAGGTAGTTAACTTAAATCGTTATTGGGGAAAATTGGCCGAGTGCATTTTATTTCTACCAATGTTTAATTACTATTAATTTGTGGATCACACATGAAAAACAGTTTGTTGCATTAATAAGGAGTAGGTCAGTGCACATACCTTacatagactgcgagcagtctctttttTTCTCCAAGACTACACAGACAGGAGTGTGTTACTATGAGAATCTGCAACCCATGTCACACAAGCTGATAACCTGGACCGGCAATCTCCTCCTTCTCTCCCCAACCCCTTCTCGGTTTTACCCAAAATTTGAACGATGTTTATATTTCTACCCACACATTGCATGTGAGCAAGAAAGGACCACTGCTTGCAGTCTATTCCTTACACTGTATACAGCGTACAAGCCAAATTTAAAGTTGGTGGGTAAAATTCCTACATGCAATTCCAGTAAGGTGAGGTCTTGACCCAACTGCAAGTACAATGCAAGGttctattatttttatttggattCAGGCGTGAATGATGGCTAAAGATAACTTTGGGTCAGACTCTCATCTTCACAAGTTAAAGCGATTCACAATCATGTTCATGTGCACATcgacattttttcttttaaatattattttttctaGTATTGAATTAATCAAGTTTGGCATTTGACACAAGAGACATCATTGACCTCAAACAGTATACACTTGAGCATAATTTAAGTGCTCCAAGTTTCCATCTCCTTACATACAATGTAAGAAGGAATAACAGCAACTTCTATTGGCTTCCCCatgatgaaaagttaaacaataattgttattaacataataataaaataaattagctattattattattattattatta

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001705 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|SOCS · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07525 all species →	SOCS_box	SOCS box	Domain	Interproscan
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR011047 all species →	Homologous_superfamily	Quinoprotein alcohol dehydrogenase-like superfamily	Interproscan
IPR001496 all species →	Domain	SOCS box domain	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR036036 all species →	Homologous_superfamily	SOCS box-like domain superfamily	Interproscan
IPR051983 all species →	Family	WD repeat and SOCS box domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15622 all species →	WD40 REPEAT PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan
GO:0000209 all species →	Biological Process	protein polyubiquitination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24743	WDR31; WD repeat-containing protein 31	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.