Gene detail

Detailed information of XP_068723063.1 in Montipora capricornis

Genomic Location: chr10:31274968...31356562
NR annotation: XP_029206623.1, vesicle-associated membrane protein-associated protein B-like [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9WV55	Vesicle-associated membrane protein-associated protein A OS=Mus musculus OX=10090 GN=Vapa PE=1 SV=2
Q9Z270	Vesicle-associated membrane protein-associated protein A OS=Rattus norvegicus OX=10116 GN=Vapa PE=1 SV=3
Q9P0L0	Vesicle-associated membrane protein-associated protein A OS=Homo sapiens OX=9606 GN=VAPA PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006012 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00635 all species →	Motile_Sperm	MSP (Major sperm protein) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016763 all species →	Family	Vesicle-associated membrane-protein-associated protein	Interproscan
IPR008962 all species →	Homologous_superfamily	PapD-like superfamily	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR000535 all species →	Domain	Major sperm protein (MSP) domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10809 all species →	VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005789 all species →	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0033149 all species →	Molecular Function	FFAT motif binding	Interproscan
GO:0061817 all species →	Biological Process	endoplasmic reticulum-plasma membrane tethering	Interproscan
GO:0090158 all species →	Biological Process	endoplasmic reticulum membrane organization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_068723063.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068723063.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

30TPM > 0

1Conditions

173.8Max TPM

123.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	30	123.47	173.75

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	173.75
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	172.68
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	170.12
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	169.67
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	169.35
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	169.27
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	167.42
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	167.41
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	166.69
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	164.32
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	160.85
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	160.60
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	160.25
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	159.24
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	158.55
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	155.32
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	145.69
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	143.46
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	141.85
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	141.40
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	141.16
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	140.90
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	140.42
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	136.63
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	135.20
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	133.21
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	129.31
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	122.92
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	87.24
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	59.93
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.