Gene detail

Detailed information of XP_068725047.1 in Montipora capricornis

Genomic Location: chr10:10882068...10896105
NR annotation: XP_029194647.2, CWF19-like protein 1 [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_068868946.1

GCCAGatattccaagatggcggcaaaaCTGAAGAAACGAAAGTAACAAGAAATAAACAATCTTGACGAGATCTATAGATAGCCGCTTATCGCGTTAGAACATGGCAACACCACTGAAAATCCTTGTTTGTGGAGATGTGTGTGGAAAATTCAATGTGCTTTATGGAAGGGTCcgaaatattttgaagaaaaacaaagattttGAGATGCTGCTTTGTGTTGGAAGCTTTTTTGGGACAAGTGTTGAATCAGAAAAGGAATGGGAAGCATACAAAACAGGAAGTGTTACAGTTCCCATTCCCACCTATATACTTGGGCCAACAGAAAAACTGGAACGTGGCTACTTTTCTGAAGTTTCTTTGGACAGTGGTGGAGAACTGTGCGAGAATTTAACATATCTCGGTAGAAAAGGAGTCCTTAAAGCACAGTCAGGATTGCAGATTGCATACTTAAGTGGAGTTGAAAAATCTGAGGCTCCAGAGGAGGGGTGTCATTTTACCCAGGATGATATTTCTACTTTGGAGTCTCAATGCCAAGATGAAAGCTTTAAAGGACTGGATATTCTTATCACTTCTTGTTGGCCTAGAGGAGTTTCACAGTTTGCCAACAGGCCTGATGGCATTGACCCTGATAATTGTGGATCATTCCAAATTTCCAGACTAGCAGAGATGCTTAAACCAAGGTACCATTTTGCTGGTCATGAGGGAGTACATTATGAAAGAGTGCCTTATAgGAACCATCAAGTTCTAAGGGAAATGGCACAACATGTAACAAGGTTTATTTCTCTTGCTCAAGTTGGGAATCCAGATAAGAAAAAGtacatgtatgcattCAACATTGTGCCCATGGTGTCTATTGACAAGAACGAGCTTGTCAAACAACCTCCAGATGTGACAGAATTTCCTTACAAGAAGGTGTTGGGAGGTAACGGCATTAGTGCAATGCACAAAGGAGAGGAAATTCAACAGCAGAGCCTGTCTTCAAGCCAGAACTTCTTCTTTGACATGAACAGCACTGGAAACAAACGACAGGGAAACACTGGTGGTGAAAGCAATTTCCCTAAAAGGCCAAGAAAAGGACCCCCTCCATTGAAGGGTTCATGTTGGTTCTGTTTGGGAAGCCCTCAGGTTGAAAAGCATTTGGTCATCAGCGTAGGGGATGATTCTTATGTGGCCTTGGCCAAGGGAGGCCTGGTGCCCGATCACGTGTTGATTTGTCCCATCGGTCATTTTGAGTCAACAGTCAAACTTACAGAGGATGTCCTCATGGAAATTGAGAAATATAAGAACGCTCTTCGCAAGTTATTCCACAGTGAAGGGAAATCCTGTATCATTTTCGAGAGGAATTTTTACACGCAGCATCTCCAGTTGCAGGTGGTACCGGTTCCGCAGACAGATGTCGAGGAGCTGAAAGATATCTTCAGAGAGCATGGGGATTTCAATTCTCTGTCGTTAAGAGAAGTCGCTGTCAACACGGAACTAAAACAGGCTGTACCAATAGGCGCACCTTACTTTGTCGCGGAGTTTGATAACGGCGAGCGCTTACTGCACCGTGTGTCAAACAAGATGCCGCTACAATTTGGCAGagagGTAGTAGCCAGTCCTTCGCTTTTAAACATGGCCGACAGGGTGGACTGGAAAGCTTGTAAAGTTTCCGAAGACGAAGAGAAAAAGATGGTCGCTGCCTTCAGAAAGAAATTTCAGCCATTCGATTTTAACTCGTAAAACAAGGATCAAAACTAAGGAAAGTGAGAAGTTTTCCCGCTGGTCGGATAAGAATGATAGCTTCTCCGAAATCTGTAAAAATGTACTGAGTTACTCTGAACTTGGAGGGGACCAAAACTAAAACATGGCAATGATTCCATGTTTTTCGGAAAGTTGAAtgaattaatgcaaattttagAAGAGCAACTTTTTTATATTACAAAAAATTACTTTACACCGGAGGAAAGAACTTTTgcaattaaatttgattttcaCCAAAAATATGTTGGGATAAAAATGAATTGTAGCATCgcttttttcactttcaaatttctgtgaCGTGAACAGTCAAAGAGCGTCTCTATAGCAACAATTGGTGAACATATGTTCAAGATGTTGGCGCCCAGaaatctgaaaataaaaatgatctAAAATTAATTCATTTACTTTCGGATTCAAAAGCTTTATTTGAAAATTTCCaaacaaatttaattgtaaaaGTTGTTTCCTTTGGTTTAAAGGTTTTATTTGTAGGAGTAGAGTTTCGCTGTATTGGCTGCTTACGGAAATCACAAAGAAAAACACGCACCCACTCAGAGaccttttatttcttttagaagAGATGATTATATCGATgcaatgttctttttatttatccattaaaatattttatgaaaTTTCTTACAAAACTAAAATAAAGTAAGGTTTGTTACTCGTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8AVL0	CWF19-like protein 1 OS=Xenopus laevis OX=8355 GN=cwf19l1 PE=2 SV=1
Q8CI33	CWF19-like protein 1 OS=Mus musculus OX=10090 GN=Cwf19l1 PE=1 SV=2
Q5R8R4	CWF19-like protein 1 OS=Pongo abelii OX=9601 GN=CWF19L1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003055 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04677 all species →	CwfJ_C_1	Protein similar to CwfJ C-terminus 1	Family	Interproscan
PF04676 all species →	CwfJ_C_2	Protein similar to CwfJ C-terminus 2	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036265 all species →	Homologous_superfamily	HIT-like superfamily	Interproscan
IPR006768 all species →	Domain	Cwf19-like, C-terminal domain-1	Interproscan
IPR040194 all species →	Family	Cwf19-like protein	Interproscan
IPR006767 all species →	Domain	Cwf19-like protein, C-terminal domain-2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12072 all species →	CWF19, CELL CYCLE CONTROL PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0061632 all species →	Molecular Function	RNA lariat debranching enzyme activator activity	Interproscan
GO:0071014 all species →	Cellular Component	post-mRNA release spliceosomal complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24939	CWF19L1, DRN1; CWF19-like protein 1	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068725047.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

30TPM > 0

1Conditions

48.6Max TPM

19.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	30	19.71	48.57

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	48.57
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	36.27
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	34.83
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	34.47
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	28.47
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	27.38
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	26.12
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	26.09
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	25.35
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	24.37
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	24.27
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	23.81
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	23.63
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	21.81
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	21.47
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	21.13
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	21.04
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	20.53
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	20.11
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	20.01
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	19.46
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	19.30
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	19.27
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	18.90
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	18.60
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	18.60
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	18.52
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	17.08
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	16.62
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	13.30
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.