Gene detail

Detailed information of XP_068725064.1 in Montipora capricornis

Genomic Location: chr10:59169069...59175687
NR annotation: XP_029196907.2, inter-alpha-trypsin inhibitor heavy chain H4-like isoform X2 [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_068868963.1

GGTGTTCGTGTAAACGCAAggtgtaaccgcatcgaaaacgatgcggttacaaatgaaaccgagttcgtgtaaacgctgcctgaaCTTTCGCAACGATATTGAACACGATCTCAGATTGGTTGAAAGCGGGAAACCGTGAAGCAGACAAAAACTGAGCACAAAAGAGTCTGCGGTAAGAGTATAACAAACAGTCATCACTTTGCTGGCCGGACGCAAAATGGAGTATTCCTTCTACATCTTTGTCCTTTTGAACTTCGCCCTCTTAGCGAGTCCAAAAGACTTCACCGCTGACTTTGTCCCTCGTTCAAATCGGGCTCCGAGAAGTGCGCAAGATAATGTTCTAACACCGCTGAGATTGCAGATAACTTCCAAAATATCTTCACGGTTTGCAAACACATTGGTTACAAGCACCATGGAGAACAACTCGAGTCGAAGCAAGGAAGCAAGGTTCGCTGTCCACCTTCCCGAGACAGCATTTATTTCGAACTTTTCAATGGTAGTCGATGGAAACGTCTACGTTGGCATGGTGAAAGAGAAAAGTGTTGCGACGGCCGAGTACTCAAAAGCGAAAAACAACAGTTTGAACACAGGTTTGGTGAGCCAGTCAAGCAAAGGGAGTATTAGAGGCATGGATACATTTGAGATCGCTTTTAATGTTGCACCTCAAAGTGCCGCAGAATTTCGTTTGAATTATCAACAGCTTTTGGAACGGAAAAAGGGATATTACGAACAAGTGATAAGTGTTCGACCGAAACTGATTATTCCTCTCCTCGAGGTTGTGGTCGATATTGATGAGCCTCAAACCTTGAGCTTTGTCGATGTGATGAAAATTCGCAACGATCCGAGCGACAAAGTCGAGTTGGGAAATCCACTGGACGTCACAGTGCAGCATAACTCACAGAAATCAGTGCACATCGAATACAGTCCAAGCGAAGAAGAGCAGAGAAGAGTGGGTGCCAATGGAATATTCGGAGATTTTATTGTCAGGTATGACGTAAGCCATGGAAGcgacgctggagttcttcaagTCCTTGGTTCCTACtttgttcactttttttctCCCAGCGGCTTGAATCCTCTCGCAAAAGATGTTGTCTTCGTAATCGATATTAGCGGCTCAATGTCTGGTACGAAGATAACGCAAACTCGCGAAGCCATGCACGCAATGTTGGACCAGCTCCGAAGCGATGACCTGTTTAATATTGTACTGTTCAACGGAGAAGTTCATCCTTGGAAGTCACGTGCATCTTTGGCGAATGGTGCTACTGTCTCGGAAGCCAAAGACTTTGTAAATACTCACGTCATTGCAACAGGAAGCACAAACATAAATGGTGCTCTATCCTACGCTCTCGATTTGTTAACGGGCACCAGCAATGTGCccattgttttgtttcttaCAGATGGCCAACCAACTTCCGGAGAGACAAATCCTTTAAACATCAGGGCTAATGTTGCAACTGCCAATAAAATTGGTGCTTCCATTTTCGCTCTTGGCTTCGGCTTTAATCTGGACTTTGACTTTCTCATAGCTTTATCCGCCGAAAACGGGGGAAACGCTCGAAGGATATACCCAGGGAAAGATGCCGCCAGTCAGCTTGAGGGTATTTTTGACGAGATCAGTTCGCCTTTGTTACAGAAAATTGACTTCCAGTATCCTAAAGAACTAGTTGATGAGGCTTATACCACGGCTGTGTCATTTGACCGTTACTTCAATGGCTCAGAACTTGTTGTCTCTGGTAAGCTTAAGACCACCGCCCTTTCACAGTTGATGATAGTGGCTATTACTGGTTACGCTGGCAAAGTTCCTGTCCCGTACTCTTTGTCACGGGCCGTCAGTGACCTGACCGTCCCTCCTAATCAAGTGGTAATCAAAGATTTCACCGAACGATTGTGGGCGTATAAGAAAATCAAGGAGCTCCTTGTTCAGTTGCTGGTGTCAAAATATGAGAACGAAAAAATTCGGCTGAAATCTCGGGCGCTGAATCTTTCACTAAAGTACAACTTCGTCACACCCCTCACCTCCATTGTAGTTGTCCAATCGCAGGTGTACCTCGAGGATAACGTTCTATCTGATAGAGAAATGAGTGGCAGAACTTACTACGGATCAGCAGCTAAGTGGAGCCATTTTTCCGCAGGGTGGTTGCTGTTTTTTCCTAGCTCATTTTTCCTTATGCAATTTTGCATGAACTAGACTCTTCTGAGCTTAGGGCAACATGTTCATTACAAGGTCAGAAATTGGTTCAgtaaaacttgaagtaatttaGCCTGACTAATTTAAACAGTCGCCCTTTGTCCTTCACCGGCATCCGTGAGCTGAGAAAAGGCTGGATCAAACGTCCCAGTACCTGTGTTTGTTATAGCTAGAATATTGCAATATGATTGCGTTAACACTTCTATCCCATTCTATCAAAAGTATTAATTTTAGATAATTTTAGCATATAGCTGGCTTAACTATTCCCTCTCGCATTTTTGTGTGAAACTTCGACTAGTGTTCAGTGTCCTGAGTAAACACTGGACGTTTCGTTCGAAccttaatagggagtttaaaggggctaggtcacgctgttttaggtaattttgtttaaaattgttagttatgagctctaaacgtcaaattggcagagcaagagtctttcatttgcaaaatcacggccacataacaattgagaatgatttcccagctgtttaaatgacattttgatatcaactgatataaatttgaaaaaaggtgggccgacgtttttcaaatttacccaaatgcaaacCACTTCAAttctccccagttttgtccatccttgtcccctCTTCGCTTTCCtgtgtttgagttcttctatagttttgtgccgttattttgttatttcagttaattctatgaccatttgatcaatgatgaaattgcctaaaattgcgtgacctagcccctttaagcaacgacgacggctacgacaacAAGATCACCACAAAccaaggaaaaataatcgtgttgtACGTGCGTCACGAATTTCAGCGCATTTCTTCGCCGTACTCTACGAAAACAACAACCGTGGACAACGTAAGCATCAAAGAATGAACCATTTTTTCTGTGTTAAATTACTCTTAAACCGTTTTTAAGAATCGATAAGTGGAATACTTTTCCCGTAGTTgtacaaagtgaaaaagaatTATGAAATAATCGCAAAATAGTTGCATTTTTGTCGACGTTGCCGTCGTATTTGCTTAAAGGGGCAggttcacggttttgcgcatgtccaagctttggcgttagcagttgtaaattttacggtctCGTACTGAACCGTATGATGTTCATTAACCACTGAGAGTATTACAGCAAATACACGTaatgactaaggcccaaatttggttGAAGATACTGCGGGTTTACGCAGGAAATGTCAAATTTCATTTTGGcctcgaatttattgtacggggCGAACattttattctacgcacgagttatctattcgcatgcagtaggttcataacacaaaggaaatgattgcaaaagtaattccaaaGAGTAATTACACTTATATGGCATTGTTTCCTTTTCTTGCATCATTGCTTTCGATTGtgtcaataacaatggaattaattCGGCTGACATGACattttgcccatgcgcagagacatgaaactctccctttaaacTCCGTATTATCCAGTTAGAAGAAGACAAAAGACCGTAACTTTCCGTAGCCTGGATCGAGTTCAGGCTAACGAGACAAAACTTCCTCCAACTCTCATGAACACTTTGAGCAGGTTCAAATTCGATGAGAGCTCTCGAGAGTGGATGAGAGTTCCTGGctaaacgagagcgagagtttcaactctggactttacaataaagttattacaaCTAGTGCAAATCAAATAGTAGCTTTTAGTGTGAACACTGTTTGGAAATTGAACACCGCTTTAAGGTTCTTGAATTCATTTTACGTGTGAAGTTTCTGATACTGATTACTGAGTTTACAACAGTAGTACAGCAGAGGACGTGATCTTTCAACAAAGAGACCAGGCCGTTTCTACGCGACGCACATGTGCTGGAAAatgcaatttatttttaataacttgCCAGCTTTCGAAGATATTCCAACATTTCCCACGCAAACTACGACACTTGCACTGACCTGACTACAACTTGATTGTAATTATGTTTCGGCAAACTGGTGAACATTTATTGTTTGGCCGGCTAATCTACCTGGAATAATTAACTGAAGAAACTAAAAAGGATGTAATTACAAGCGCTACTTGTACGTGATGCCCTCAAATATAAACAGTGTGGTCCCATTAATTAACAGTTCCTAATTACATGCCTTAAGTATTACAACTTGAAGGCAGCAATCGAAATTAGCATCATAAGTTAAAGATAAACTAGAGTAGCTTTGACTGTTAAAACGCCTAGTTAACATCGAGTGTTATTAATCGAGGCCATGGTACAGTACTCCGTAAGCCAGTGTTGGCTTCATTTTGGTTTAGGCTTTCTTTAACAGAGGTTATGGATCAATTTTGTTAAGCCCTTATTTGGcgccttttttttgtttttgtttgtttgtttagttTTTGTTACTCCATAAGTTCGTTAATCAACAGATCACGTCCGTTCCAGAAAGTAGAGTACTGCGAGTCTGAGTCCCAACCATTGCGATTGGTCTCAAACGATTTTCTGCCCAAACCGGGTATGGTATTTCGGTAGATAACCACGTTTCAGGAACACCGTCAGAGTTGGTCAAAGGTACCGCCAGGATTATTGCCCAGTAATTCTTTAGTTCATTCCCTGACCAATCGCAATACGTTGCCGGGTCCAGGAACGTGGATACATTATATAGGCGTTTCTTCTCGATTCTATTATGCATTTGTTTTGAGGAGCCACTCGCTAAAGTACACAGAATACCAAGAAGAACTGTTGTAagagtgaaaagaaaaattaaacaagtGTGACACAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3T052	Inter-alpha-trypsin inhibitor heavy chain H4 OS=Bos taurus OX=9913 GN=ITIH4 PE=1 SV=1
Q14624	Inter-alpha-trypsin inhibitor heavy chain H4 OS=Homo sapiens OX=9606 GN=ITIH4 PE=1 SV=4
A6X935	Inter alpha-trypsin inhibitor, heavy chain 4 OS=Mus musculus OX=10090 GN=Itih4 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009651 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08487 all species →	VIT	Vault protein inter-alpha-trypsin domain	Family	Interproscan
PF00092 all species →	VWA	von Willebrand factor type A domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036465 all species →	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan
IPR013694 all species →	Domain	VIT domain	Interproscan
IPR002035 all species →	Domain	von Willebrand factor, type A	Interproscan
IPR050934 all species →	Family	Inter-alpha-trypsin inhibitor heavy chain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10338 all species →	INTER-ALPHA-TRYPSIN INHIBITOR HEAVY CHAIN FAMILY MEMBER	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for XP_068725064.1 in Montipora capricornis.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_068725064.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068725064.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

29TPM > 0

1Conditions

27.8Max TPM

10.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	29	10.87	27.77

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	27.77
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	25.74
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	25.42
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	25.38
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	24.50
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	22.79
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	21.15
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	21.02
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	18.69
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	17.76
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	17.22
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	17.05
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	12.96
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	12.17
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	11.55
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	10.89
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	10.50
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	10.11
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	9.69
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	8.66
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	5.09
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	5.01
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	5.00
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	4.80
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	4.44
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	4.39
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	4.02
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	3.93
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	3.64
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.