Gene detail

Detailed information of XP_068725077.1 in Montipora capricornis

Genomic Location: chr10:66359740...66378155
NR annotation: XP_029186480.2, N-acetylgalactosamine-6-sulfatase-like isoform X1 [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_068868976.1

ACCTGTTACGGTAGACTCGGAAAAGATCATAGGGAGCTCACGTGACGTGACCAAGTTGCGGGAATTTTGAGGAATTTTGAACGAAATTTAGCCAAAATTTGGGGATGGCTCAAGAGAGACTAACTATTTGGggctttgtttttgtgctttGTGTAGTAACTGTTAGTGGAAGCAATGGAAAGCCAAATGTTATAATTATGCTGATGGATGATATGGGATGGGGTGACTTGGGAATATTTGGTCAGCCTGCAAAAGAGACACCAAATCTGGACAAGATGGCAGCAGATGGAATGCTCTTTCCAGATTTCTACACTGCAAATCCACTTTGTTCTCCATCACGTGCAGCTTTGCTAACTGGGCGCCTTCCAATTCGTAATGGATTTTACACTACAAATGCTCATGCTAGAAATGGATACACTCCTCAAAACATTGTTGGAGGAATTCAGGATAGCGAGGTTCTCTTACCAAGGCTACTGAAATCTGAAGGATATTACAGTAAAATAGTTGGCAAATGGCATCTTGGTCATCAAGCCCAGTTTTTACCACTGCAGCATGGATTTGACGAGTGGTTTGGTGCGCCGAACTGTCATTTTGGTCCATATGACGATGTTCATACCCCTAATATTCCTGTTTACAAAGATAATAAAATGCTTGGGAGATATTATCAACAATTTCCCATAAATCAAAAAACAGGCGAATCCAACCTGACTCAAATGTTCACAATGGAGGCACTTGATTTCATAGATGAAAGAGCCAAGACCATGAAGCCATTCTTTTTATACTGGGCACCAGACTCCACTCATGCACCAGTCTATGCATCAGCAGGATTCCTGGGAACTAGTCAAAGAGGACGGTATGGAGATGCGGTTAGGGAGTTGGATGATAGCGTTGGAAAGATTCTTCAGAGATTACAAGATCTTGGCATAGCCAACAACACCTTTGTGTTCTTTTCATCTGACAATGGAGCTGCTCTAACTTCAAAAACTAGAGGGGGAAATAATGGACCATTTCTCTGTGGCAAAGAGACAACATTTGAGGGTGGAATGCGGGAGCCATCAATTGCATGGTGGCCAGGCAGAATCAAACCAGGCCAGgttagTCATCAACTCGGCACAGTCATGGACTTATTTACAACGGCATTGTCATTAGCGGGAGCCAAACCGCCTACCAACAAAGTGATGGATGGTATTGATCTCAGTCCAACTCTTTTTAATCGGAGCATAAGTGACAGATCTGTGTTTTTCTACCGCGGCAATGAGATGATGGCCATAAGGCACGGCTTGTACAAAGCGCATTATTGGACGTGGTCTAACAGTTGGGCAGAGTTCCATAAAGGAACAGATTTCTGTCGCGGCGAGGAAGTTACTGGTGTTACAACCCATGAACAAATGAACTACACTGCATCACCGCTGTTGTTTCATCTCGGGCGTGACCCTGGTGAAAAGTACCCCATCAGGTCTTCTGATCCAGAGTACAAAGTTGTGATTATTGATATTGAGAAGATCGTCTCAGAACACAAGTCAAGTCTGATAGCTGGCAAACCCCAACTCAACATCTGCGATCCATCTGTAATGAACTGGTCGCCCCCGGGTTGTGAAGATATCGATGAATGTTTCAAGACACCTCCGTCTGATCCAGAGAAATGCATCTGGCCTCACTAAGAGCGCATTCTTTTGGGACAATTTCAGTTATTCCTATTCCGGTGTACAAATaaaggaatacacggaataccTATTCCCAAAAGAACGAATCTGCCGAATTGGTCCCAAGAAAACACGTTTACTGTCTATTCGGAGTATTTCTGTTCCGGAATAGTCCCAAAAGAACGCACGCTAAATAATGCTGGGTTTACAGCAGCACTCGCTAATGCTTTGATGTATATTTTTTGTAGATAGACTTAAAAATTCTAGAGAagtttaaataattaacaattattcaccgaagtggagatGAATagttcgcggctcggtaaatatccaccactttcaccgacactgaggtgaaataattgttttactggataccacacaagttgaataaaaagtgaaccaaaaagcttttttaatttttgtaaaatgtggtcGGAAATTTCAAATCTCGCGCGCCGGTGAATGGTACTTGGATAATCACCCCGCTCCGGGTTTGCAAATCAGGGTGGGCggagagcactattcacttttgtggtatatgaccattttacagttctgtgctcagttaccaggcctttcaATAAAAGCGGgcctggagttgaccttgttttgttACAAACCTCAccgcttttcttatgtaaatagaaactggtagcattacaacaacatgataagcaatgaggtttgtagCAAAGCAAGGTCAAGTCCAGGGTCGCTTTTATTCACAGGCTTGGTAAGatagcacagaactgtaaaatggtctactgACATAGTAAACCTGGTAGGCTACGAGAGCAGACACCATTTGCAGATCGTATGTCCACCTCAGATAGAGGAAGTATCACTTGTAACGTAGTGCTTACAAGTCTTGTTAGGTAGCGTTTCTAGGTGTCTTGGTTACCAAAAAGCACTGAATTTATGAATCAAGTTCGGCAGAATCGTCGAACACGCGACACGATGGAAAATGTTTCTTCACTAAATTGTTTGTAATGAGGATCTGTCAATGCTTGGAATCAATGTATTATACCTTTTTTATACTTGAATAATAAACGCCCTGAATATAGAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q571E4	N-acetylgalactosamine-6-sulfatase OS=Mus musculus OX=10090 GN=Galns PE=1 SV=2
Q8WNQ7	N-acetylgalactosamine-6-sulfatase OS=Sus scrofa OX=9823 GN=GALNS PE=2 SV=1
Q32KH5	N-acetylgalactosamine-6-sulfatase OS=Canis lupus familiaris OX=9615 GN=GALNS PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000907 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14707 all species →	Sulfatase_C	C-terminal region of aryl-sulfatase	Domain	Interproscan
PF00884 all species →	Sulfatase	Sulfatase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017850 all species →	Homologous_superfamily	Alkaline-phosphatase-like, core domain superfamily	Interproscan
IPR024607 all species →	Conserved_site	Sulfatase, conserved site	Interproscan
IPR050738 all species →	Family	Sulfatase enzyme	Interproscan
IPR000917 all species →	Domain	Sulfatase, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42693 all species →	ARYLSULFATASE FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004065 all species →	Molecular Function	arylsulfatase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01132	GALNS; N-acetylgalactosamine-6-sulfatase	EC:3.1.6.4	Lysosome	ko04142	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068725077.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

29TPM > 0

1Conditions

38.3Max TPM

18.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	29	18.07	38.35

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	38.35
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	37.89
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	35.66
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	34.92
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	33.08
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	32.66
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	30.27
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	28.87
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	27.99
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	27.90
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	27.40
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	27.37
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	26.50
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	26.38
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	24.75
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	22.22
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	21.52
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	17.80
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	17.69
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	13.00
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	12.77
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	12.55
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	12.25
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	11.62
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	11.04
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	10.25
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	9.94
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	9.19
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	8.76
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.