Gene detail

Detailed information of XP_068725085.1 in Montipora capricornis

Genomic Location: chr10:3738716...3759801
NR annotation: XP_029187629.2, poly(ADP-ribose) glycohydrolase-like isoform X2 [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC138021963

ATGAGTGCAAGATCTGGTGGGGAACCCCAGCGGAAGAGGCTTAAACAAACTAGCATCGAAGAGAGCTTCAGTCGCTATCGATCAATCCTTAAATCGCAGTTGTCCCCTCACCTTTCAGAAACGAAAGAAACATCTGCTCCAGAAGTTATGCAGCGTAGCATATCACCTAAGGAAGAATTGAGAAAGAAAAGGTCTCTTTTAGCTGATGCTGCTGAAAAAAGAAGAGGTAGCACTTCTAACACAGCAGGTACATCAGCAACATCTACCACTAGTTCTGAGATCGTAGTTGAAGGAAACAGCAAGAATGGAATATTAAGTGATAATGAAGACAGTCTCGGTTTTGAGTTTGATGATTCGCCTCCCCTTTTTCCTGATTCACCTTTACCAGCTCCTCCTCCAGACGAACTCCCTGCTACCAAGACTAGGCAATGCTTTGTCTCAGGAGGAACACCTCTTCAAAGTGTTAACAGAATTCCAGATTGTTCACCACCACTCCCTCCTCTCCTTGCTCAACCTGATCACACTGTTTTAGTGCGACCGTCTATCAGTGGTGACTTTGCAGTTCCTCCTGTACCTTCACATGTAAATTACAGGGATAAATGGGACAAAAATCATGTGCGGATGCCTTGCTCGAGTGAAAACCTTTATCCTGGACAGAATTCAGAGAAGAAAATCCAAAACCGGTGGGAACTTATTGAAGCCACCTTATTGGGGCCAATAGCAAGCTCACTTGAGCTGCAGGATGCCATTTTAAAGTACAATGCTCATTATTCAAAGCGTTGGAATTTTGAAGCTTTACACAGCTATTTTAATGAGGTTTTGGATGTTGCTGCAAGAAAAGAGTTCTTTAACCAAACATTGCCTGCTATGGTAACCCTGGCTCTTCGACTGCCATCTTTGTGCACTCAGGCCATTCCACTTTTAAAACGGCAACAGAATCACAGTTTAACTCTTAGCCAAGAACAGGTTGCTTGTTTATTGGCCAATGCCTTCTTTTGTACTTTTCCACGAAGAAACTCCTGCAAGCATTCAGAGTACTCAACATTTCCGGACATCAATTTTAACAGGTTGTTTCAGGGAGGAAAAGGAGGAACAAATTCTGTGAAAACAGAGAAGCTACAAGCTATATTTCATTACTTTAGGAGAGTAACTAAACAAATGCCAACCGGAACATTGACTTTTCAAAGACAGATTGTGAAATCCGGTGACATGCCAGCTTGGGAAAGGTGCTCTGCATCTTTTGGTAAAATTCATGTTTCCACAAAAGGAACAATAGAAGACAATGGCATTGGATTTCTTCAGGTCGATTTTGCAAACAAATACATTGGAGGAGGCGTTATAGGGGAGGGATGTGTGCAAGAAGAAATCCGTTTCCTTATCTGTCCTGAGCTGATACTATCTCGACTGTTTACTGAACGGCTTGACGACAACGAATGCGTTTTTATCACAGGTGCTGAACGTTTCAGTGATTACGTGGGTTACGCGCACACCTTTAGATGGGCTGGGAATCACGTGGATCAAGCAACGCGAGACTCTTGGGGTAGACGGTGTTCCAGGATTGTTGCTATAGATGCAAACATATTCCGCTGTTATACCGATCAGTTTGAAGTTGGGCTTCTTAAACGAGAACTCGATAAGGCGTATTGTGGTTTTTATTCTCCGGTAGAACAGAGACATCTACCTGCAATTGCTACTGGAAACTGGGGCTGCGGAGCATTTGGTGGAGACCCCAGAGTCAAAGGATTGATTCAAATGATGGCATCTGGAGCTTGCTCAAGAGACCTTGTTTATTTCACGTTTGGTGACGATGAGTTGGCTGGAGATCTTCTAAATATCCATTCTTTCGTCACAGAAAGAAAGTTAACAGTTGGTGATGTTTGGACGGTGATGATGCGATACGGCAAAGAAATCCGTGCCGCAAGTTCCGTTACCGTTAAACTCTACCCTTTCATGCGCGAGTTGCAGGACAAATACGAATGCGACACAGACGATGAAGTAGCAACTGGACTAGGAGAATCTGACGCCACCTTGGTTTACACGCTAGAGCCTGATTCAGACTCGTACAAAGACAACACACCTTAG

Transcript

rna-XM_068868984.1

GAACTTGGTATCCAAGCCAAAACGAAATGTGCTCTTTATATTTGCGTGAGCGATGTAGAAAGAATTCATGTTGTTTGCCTTCAAACTTCACTTCACTTATGCTCTGACAACTCACAGATCCAGGGTACTTTACTCTTCATGCTTTGGAACTATATGATAAATTATGAGTGCAAGATCTGGTGGGGAACCCCAGCGGAAGAGGCTTAAACAAACTAGCATCGAAGAGAGCTTCAGTCGCTATCGATCAATCCTTAAATCGCAGTTGTCCCCTCACCTTTCAGAAACGAAAGAAACATCTGCTCCAGAAGTTATGCAGCGTAGCATATCACCTAAGGAAGAATTGAGAAAGAAAAGGTCTCTTTTAGCTGATGCTGCTGAAAAAAGAAGAGGTAGCACTTCTAACACAGCAGGTACATCAGCAACATCTACCACTAGTTCTGAGATCGTAGTTGAAGGAAACAGCAAGAATGGAATATTAAGTGATAATGAAGACAGTCTCGGTTTTGAGTTTGATGATTCGCCTCCCCTTTTTCCTGATTCACCTTTACCAGCTCCTCCTCCAGACGAACTCCCTGCTACCAAGACTAGGCAATGCTTTGTCTCAGGAGGAACACCTCTTCAAAGTGTTAACAGAATTCCAGATTGTTCACCACCACTCCCTCCTCTCCTTGCTCAACCTGATCACACTGTTTTAGTGCGACCGTCTATCAGTGGTGACTTTGCAGTTCCTCCTGTACCTTCACATGTAAATTACAGgGATAAATGGGACAAAAATCATGTGCGGATGCCTTGCTCGAGTGAAAACCTTTATCCTGGACAgAATTCAGAGAAGAAAATCCAAAACCGGTGGGAACTTATTGAAGCCACCTTATTGGGGCCAATAGCAAGCTCACTTGAGCTGCAGGATGCCATTTTAAAGTACAATGCTCATTATTCAAAGCGTTGGAATTTTGAAGCTTTACACAGCTATTTTAATGAGGTTTTGGATGTTGCTGCAAGAAAAGAGTTCTTTAACCAAACATTGCCTGCTATGGTAACCCTGGCTCTTCGACTGCCATCTTTGTGCACTCAGGCCATTCCACTTTTAAAACGGCAACAGAATCACAGTTTAACTCTTAGCCAAGAACAGGTTGCTTGTTTATTGGCCAATGCCTTCTTTTGTACTTTTCCACGAAGAAACTCCTGCAAGCATTCAGAGTACTCAACATTTCCGGACATCAATTTTAACAGGTTGTTTCAGGGAGGAAAAGGAGGAACAAATTCTGTGAAAACAGAGAAGCTACAAGCTATATTTCATTACTTTAGGAGAGTAACTAAACAAATGCCAACCGGAACATTGACTTTTCAAAGACAGATTGTGAAATCCGGTGACATGCCAGCTTGGGAAAGGTGCTCTGCATCTTTTGGTAAAATTCATGTTTCCACAAAAGGAACAATAGAAGACAATGGCATTGGATTTCTTCAGGTCGATTTTGCAAACAAATACATTGGAGGAGGCGTTATAGGGGAGGGATGTGTGCAAGAAGAAATCCGTTTCCTTATCTGTCCTGAGCTGATACTATCTCGACTGTTTACTGAACGGCTTGACGACAACGAATGCGTTTTTATCACAGGTGCTGAACGTTTCAGTGATTACGTGGGTTACGCGCACACCTTTAGATGGGCTGGGAATCACGTGGATCAAGCAACGCGAGACTCTTGGGGTAGACGGTGTTCCAGGATTGTTGCTATAGATGCAAACATATTCCGCTGTTATACCGATCAGTTTGAAGTTGGGCTTCTTAAACGAGAACTCGATAAGGCGTATTGTGGTTTTTATTCTCCGGTAGAACAGAGACATCTACCTGCAATTGCTACTGGAAACTGGGGCTGCGGAGCATTTGGTGGAGACCCCAGAGTCAAAGGATTGATTCAAATGATGGCATCTGGAGCTTGCTCAAGAGACCTTGTTTATTTCACGTTTGGTGACGATGAGTTGGCTGGAGATCTTCTAAATATCCATTCTTTCGTCACAGAAAGAAAGTTAACAGTTGGTGATGTTTGGACGGTGATGATGCGATACGGCAAAGAAATCCGTGCCGCAAGTTCCGTTACCGTTAAACTCTACCCTTTCATGCGCGAGTTGCAGGACAAATACGAATGCGACACAGACGATGAAGTAGCAACTGGACTAGGAGAATCTGACGCCACCTTGGTTTACACGCTAGAGCCTGATTCAGACTCGTACAAAGACAACACACCTTAGTGCGTTGTGTTGTGTGCCGGCTACGCTGCTGACATGACAATTTAATGTCAAGAAATAACGTTTCACAAAAAATTTCACCgcaaattatttttaacatgACCAATATTTCTTGATATGTGAACTATTTAATTAAAAATGCGTTGTAACCTCTTGCTGAAC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q86W56	Poly(ADP-ribose) glycohydrolase OS=Homo sapiens OX=9606 GN=PARG PE=1 SV=1
O02776	Poly(ADP-ribose) glycohydrolase OS=Bos taurus OX=9913 GN=PARG PE=1 SV=1
O88622	Poly(ADP-ribose) glycohydrolase OS=Mus musculus OX=10090 GN=Parg PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002028 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05028 all species →	PARG_cat_C	Poly (ADP-ribose) glycohydrolase (PARG), Macro domain fold	Domain	Interproscan
PF20811 all species →	PARG_cat_N	Poly (ADP-ribose) glycohydrolase (PARG), helical domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR046372 all species →	Domain	Poly (ADP-ribose) glycohydrolase (PARG), catalytic domain	Interproscan
IPR048362 all species →	Domain	Poly (ADP-ribose) glycohydrolase, helical domain	Interproscan
IPR007724 all species →	Family	Poly(ADP-ribose) glycohydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12837 all species →	POLY ADP-RIBOSE GLYCOHYDROLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004649 all species →	Molecular Function	poly(ADP-ribose) glycohydrolase activity	Interproscan
GO:0006282 all species →	Biological Process	regulation of DNA repair	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0009225 all species →	Biological Process	nucleotide-sugar metabolic process	Interproscan
GO:1990966 all species →	Biological Process	ATP generation from poly-ADP-D-ribose	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07759	PARG; poly(ADP-ribose) glycohydrolase	EC:3.2.1.143	Base excision repair	ko03410	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068725085.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

27TPM > 0

1Conditions

30.4Max TPM

16.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	27	16.17	30.40

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	30.40
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	26.59
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	26.53
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	26.37
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	26.21
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	25.03
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	24.83
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	24.74
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	23.26
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	23.07
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	22.73
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	22.09
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	22.08
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	21.02
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	20.79
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	20.11
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	20.00
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	19.26
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	18.78
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	18.75
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	18.46
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	17.86
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	17.63
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	17.56
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	17.41
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	15.47
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	15.23
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.