Gene detail

Detailed information of XP_068725087.1 in Montipora capricornis

Genomic Location: chr10:3759858...3775482
NR annotation: XP_029187630.2, LOW QUALITY PROTEIN: N6-adenosine-methyltransferase non-catalytic subunit-like [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_068868986.1

CAaagtttcaaaatggcggactccTCAGGCTGGCTGTGAAAGCAATTAGTTAGCACTAATATGGGCGATAGATTGAAACAAATACGCGAAAAGTCGAAGCTCCGCCGACAGATTCTTGCGCAACAGCTTGGTGCCTCGGGAATTGATTCCATTGGTGATCTATTGACCAGTAAAGAAGAGCAAGAGATTAAGAAACAAAGGCTGAGCAAGGTCAAAGAAGAATTACATCAGACCCAAGCAGAGGCTTCAAGAGTGAATGAATTACCTGGTATTCCAGTAGGGCCAGTTAAGGTGCTAATTTCAGAAgggaaaaaggaaggaaaacatGATATCCTGCCTAATGAGCAAGAAGTAGATAAAACAAAAGATTCTGAAGAAGAGGATGTTGAGGAAGTCATTTATAAAGATTCCAGTCATTTTTTAAagggAACACAAAGCGCCAATCCTCACAATGACTACTGCCAGCATTTTGTTGACACTGGACAAAGACCACACAACTTCATCAGAGATGTTGGCCTTGCAGATAGATTTGAGGAATATCCAAAGCTGAGAGAACTCATCCGACTCAAGGATGAAATCATTGCTGAGCGGGCAACACCCCCAATGTACCTTCAGTGTGATCTGGACATCTTTGATTTAGATGATCTTGAATGTAAGTTTGATGTGGTATACATTGACCCCCCTCTGGAGGAGTATCAGCGACGTGCATCAGGAACTGCCTTCAGCTGGAAACCATGGACTTGGGAAGAGATACTTAAACTCGAAATTGAAAAAGTCGCTGCACAGCGCTCTTTCCTGTTTCTTTGGTGTGGTTCACATGAAGGACTTAATGAAGGAAGAAAGTGCTTGAAGAAGTGGGGCTATCGTCGTTGTGAAGACATCTGTtggatcaaaacaaacaaagctaaTCCTGGAAACACGAAATATCTTGAACCGGATGCCATATTCCAACACACCAAAGAACATTGCCTGATGGGAATTAAGGGAACTGTTAGGAGAAGCACCGATGGAGATTTCATACATGCTAATGTTGATATCGACCTTATCATCACCGAGGAGcCAGCACTTGGAAGCACAGAGAAACCTACGGAAATCTTCCACATCATGGAACATTTCTGTTTAGGAAGGCGACGCCTTCACTTGTTTGCCAGTGATGACTCTTTACGACCAGGTTGGCTCTCTGTGGGACCGAGCTTATCAAGTTCGAATTTCTCGGCTGATTTGTACAGTTCCTACTTTTCCAGCGGATCTGAAGAACTTATTGTGGGTAGCACACAGGAAATCGAGACACTCCGACCAAAATCGCCCACAGGGAAACATAAAGGGGACGCTGGAGGGCGGGGAGGGGCTATCACTCCCAGCCGTGGTGGCCAAGGCCCCAGGGCGAGGGGTGGCGTCCGCGGGGGAATGATGCGAGGAAGTGGTTTTCCAGGGAAGGGAGGAAGAGGTTTCATTAGTTTCTCTGTTCGGTGAAAAGTGCGGTCGCAGCTACTACTCTAATGAAACTTGTTTACCCCACACATCTTTATTTTACTCCTTGTGTGCGACTGCCGTTGTCCGCTGCAAATCAGAAAAGCTGAAGTGAACAGAGAGATCCCGATGACCGCTGGCTGTTGCTTGTTATTAAACCCTGCAAAATTTCTTACTCTAACTTTTATATTTGAAGAACTTGTTCGATACTTGGGGAAAACAAGGGACCTCAGGCAATCGGCAAATGTCAGACATTAACTGTAAACGTATAATTCAGTTTATGATGTGAAAACGTGCGGTTTGGCTTGATTCCTCTGTACACGACAACCATTCAGACCCTTTCATGTATCCTCTGTTGTTCCATTTTTAGCGACAATGAAACTTTTTTTGCTAGAAAATGAATAAGACTGACTGAGGACAGCTATCTTCTAGCCTTTGCAATCTTTCCCATACAAGTATTCCAGACCGGCATTGCACTTGCCACAAGGTTAATAGCAGTCGGTGTACGAAacaggaaaggaaaaagaaccaaaggcaaataaatgaaTCCCACTCTTATATGGCCGTTTAGAATCAATTTACATCTACTTCCGATTTTAACTGTGAGTGATAGCAGTCACTGTAAATCAAATTATAGCGAGTGGGAAGGGCATTAAAATGAACTGGAAAAAACTAAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9HCE5	N(6)-adenosine-methyltransferase non-catalytic subunit METTL14 OS=Homo sapiens OX=9606 GN=METTL14 PE=1 SV=2
Q5R5N4	N(6)-adenosine-methyltransferase non-catalytic subunit METTL14 OS=Pongo abelii OX=9601 GN=METTL14 PE=2 SV=1
Q3UIK4	N(6)-adenosine-methyltransferase non-catalytic subunit METTL14 OS=Mus musculus OX=10090 GN=Mettl14 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005315 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05063 all species →	MT-A70	MT-A70	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045123 all species →	Family	N6-adenosine-methyltransferase non-catalytic subunit METTL14-like	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR007757 all species →	Family	MT-A70-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13107 all species →	N6-ADENOSINE-METHYLTRANSFERASE NON-CATALYTIC SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0036396 all species →	Cellular Component	RNA N6-methyladenosine methyltransferase complex	Interproscan
GO:0080009 all species →	Biological Process	obsolete mRNA methylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23960	METTL14; mRNA m6A methyltransferase non-catalytic subunit	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068725087.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

28TPM > 0

1Conditions

41.8Max TPM

15.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	28	15.01	41.76

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	41.76
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	28.55
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	28.20
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	25.86
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	25.21
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	24.25
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	23.19
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	23.16
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	22.98
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	22.94
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	22.25
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	20.90
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	20.61
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	20.38
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	20.16
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	18.81
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	16.88
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	16.64
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	16.30
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	16.28
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	16.10
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	13.09
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	12.30
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	11.61
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	9.29
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	8.27
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	7.30
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	6.94
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.