Gene detail

Detailed information of XP_068726167.1 in Montipora capricornis

Genomic Location: chr2:43604411...43613100
NR annotation: XP_044179910.1, U3 small nucleolar ribonucleoprotein protein MPP10-like [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC138023031

ATGGCGGACGACAATGAGGCAATGGCCTCCCTTGTGTCCATAATTTCGCGGTTCGAGAATACTTTCAGTCGTCCGGAAGCGTATCTCAAACCTCCCATCTCTCTTGAGAAGGAGAATCTTGCTGTAGTCAAGGAAATATTTGATTTTTGCAAGAAGGACGAACTAAATGGTAGCCGATCTTTGGCAGGCACGTGTCCATTACAGGAACTTTTGGTGGATGATTTTGATCTGGAACAAATTTGGCAAGAAATTGAGCTACAGAATGGCCCGTTGTTGACACTTGGGAAAAGAGACGTTCAGAACGTGACACAAAACGCTAAAAACCTTACACTTTTAAGCGCAAGGAATAGTTTGGGAGATGCGTATGGAAATCACCTTAAGAATGAATTGTCTGAAAGTGATTCAGAAGCAGAGAGTGTTGACATGGAATTAAATCATTATAAAAATGGCGAAAATGGAGTAAATGATTTTGGTAATGATGAGGATGGCAGTTACGATGATGATGATGATGATGATGATGATGAGGATGAGGACGAAGAGGAAGAGGAGGATGATGATGACTATGACCGTCTTGTTAAAGGAAAAAGAACCATTGAGAGTAAACAGAAAAGAAAACACACATATTCCGCAAAAAGGACTCAGGTAGATGACACTTTCTTCAAACTTTCAGACATGATTCAATTCTTAGACAGAGAAGATAGACGATTTGAAAGAGCACATAAAAAGAAAACCCAAGGGATGGAAAATGATGACAATGAAGACAGCGATGAGAGTGACAGTGAGCTTGTTGATTACTTTATGGACATTGATAGCAACAAGGAAGATGAGGAGGATGAAGACTGGAGTAAAGCTCTTAGCGCGACTGAGTCTCTTTTTGGAAGAAAAAAACAGAAAGGAAGGAAAAAGAAAAGGATATCTGCCAGAAAAATGAAGTATGCTGACTTTTTTGATCCACCTGATGGAGAAGGTGAAGATGAAGATGATGAAAAAATGAGTGAAAATGAGCAAGAGCTTGTGGAGAAAGGTGAAGCTATGGTTGCGGACAGTGAACATGGAATGGGTCTTGGAGAGAAGGAAAAAGCAATTTCCAGTTTTGAGAAGAAACAACAAAAGTTGAAGCAGAACATTGATAAGCTGGAAAATGCAAACGTAGCCCCCAAACCCTGGCAGATGTCTGGTGAAGCAGGAGGGAATGTGCGACCTATCAACAGTTTACTGGAAGAAGATGTCAGCTTTGATCATGCAACAGCTGCTGCTCCAGATATAACAGAGGAAACAACTCAACAATTGGAAGACATTGTAAAGCAGAGAATTAAGGACCAGGCCTGGGATGATGTTGAACGAAAGGTGAAGCCGGTGACAGAACCATTTGAGTACAAGAAAAAGATACCATTGGACCAAGAAAAAAGCAAATTAAGCCTCAGTCAGATTTATGAACAAGAGTACCTCAAACAAACACAGGTTGAAGCTGAAGAGAAGGAAAATGAAGAACACGAAGAGATCAAAAGAATGATGACAAAGCTTTTCGCCAAGTTAGATGCCTTGTCCAACTTTCATTTTACTCCCAAACCGCTTAAACCCGAGCTTAAAGTGGTCGGCAATGTTCCTGTGATATCAGTGGAAGAAGTCGCCCCTGTAACCGTTAGCGATGCCATGATGTTGGCTCCTGAAGAGGTACACGAGAAGAAGAAGCAACAGAAGGGAACCACAGAATTGACAGAAACCGATAGAAAGCGAGAGCGAAGGGCAAAGAAACAAAGACAGCACCAAAGAGCCGTGGAAAAACTGAAAGGGAGGAAACTTATAGAGAAGCTCAGGCCAGGGCTTGGAAACAAGTACGCGAAACAGGCAGCTTTAAAGAGACTGGAAAAGGATAGCAAAACGTCGAAAAACGTGTCTTTGTTGAAAGATGATGGAAACGATAAAGCTGTGAAATCATCTTCAGCTTTCTTCTCTCGTCTTCAAGAAGAGGTTAGGGATCAAGTGAAGACAAAAAGGGAAACAACTAAGAAGAAACTGAATTCTACAACTACAGTGACTGACATGAAACTCTGA

Transcript

rna-XM_068870066.1

AGCAAGCCATTGAAGCCATCATGGCGGACGACAATGAGGCAATGGCCTCCCTTGTGTCCATAATTTCGCGGTTCGAGAATACTTTCAGTCGTCCGGAAGCGTATCTCAAACCTCCCATCTCTCTTGAGAAGGAGAATCTTGCTGTAGTCAAGGAAATATTTGATTTTTGCAAGAAGGACGAACTAAATGGTAGCCGATCTTTGGCAGGCACGTGTCCATTACAGGAACTTTTGGTGGATGATTTTGATCTGGAACAAATTTGGCAAGAAATTGAGCTACAGAATGGCCCGTTGTTGACACTTGGGAAAAGAGACGTTCAGAACGTGACACAAAACGCTAAAAACCTTACACTTTTAAGCGCAAGGAATAGTTTGGGAGATGCGTATGGAAATCACCTTAAGAATGAATTGTCTGAAAGTGATTCAGAAGCAGAGAGTGTTGACATGGAATTAAATCATTATAAAAATGGCGAAAATGGAGTAAATGATTTTGGTAATGATGAGGATGGCAgttacgatgatgatgatgatgatgatgatgatgaggatgaggacgaagaggaagaggaggatgatgatgactatgaccgtcttgttaaaggaaaaagaaCCATTGAGAgtaaacagaaaagaaaacacaCATATTCCGCAAAAAGGACTCAGGTAGATGAcactttcttcaaactttcaGACATGATTCAATTCTTAGACAGAGAAGATAGACGATTTGAAAGAGCACATAAAAAGAAAACCCAAGGGATGGAAAATGATGACAATGAAGACAGCGATGAGAGTGACAGTGAGCTTGTTGATTACTTTATGGACATTGATAGCAACAAGGAAGATGAGGAGGATGAAGACTGGAGTAAAGCTCTTAGCGCGACTGAGTCTCTTTTTGGAAGaaaaaaacagaaaggaaggaaaaagaaaaggatatCTGCCAGAAAAATGAAGTATGCTGACTTTTTTGATCCACCTGATGGAGAAggtgaagatgaagatgatgaaaaaatgagtgaaaatgAGCAAGAGCTTGTGGAGAAAGGTGAAGCTATGGTTGCGGACAGTGAACATGGAATGGGTCTTGGAGAGAAGGAAAAAGCAATTTCCAGTTTTGAGAAGAAACAACAAAAGttgaaGCAGAACATTGATAAGCTGGAAAATGCAAACGTAGCCCCCAAACCCTGGCAGATGTCTGGTGAAGCAGGAGGGAATGTGCGACCTATCAACAGTTTACTGGAAGAAGATGTCAGCTTTGATCATGCAACAGCTGCTGcTCCAGATATAACAGAGGAAACAACTCAACAATTGGAAGACATTGTAAAGCAGAGAATTAAGGACCAGGCCTGGGATGATGTTGAACGAAAGGTGAAGCCGGTGACAGAACCATTTGAGTACAAGAAAAAGATACCATTGGACCaagaaaaaagcaaattaaGCCTCAGTCAGATTTATGAACAAGAGTACCTCAAACAAACACAGGTTGAAGCTGAAGAGAAGGAAAATGAAGAACACGAAGAGATCAAAAGAATGATGACAAAGCTTTTCGCCAAGTTAGATGCCTTGTCCAACTTTCATTTTACTCCCAAACCGCTTAAACCCGAGCTTAAAGTGGTCGGCAATGTTCCTGTGATATCAGTGGAAGAAGTCGCCCCTGTAACCGTTAGCGATGCCATGATGTTGGCTCCTGAAGAGGTACACGAGAAGAAGAAGCAACAGAAGGGAACCACAGAATTGACAGAAACCGATAGAAAGCGAGAGCGAAGGGCAAAGAAACAAAGACAGCACCAAAGAGCCGTGGAAAAACTGAAAGGGAGGAAACTTATAGAGAAGCTCAGGCCAGGGCTTGGAAACAAGTACGCGAAACAGGCAGCTTTAAAGAGACTGGAAAAGGATAGCAAAACGTCGAAAAACGTGTCTTTGTTGAAAGATGATGGAAACGATAAAGCTGTGAAATCATCTTCAGCTTTCTTCTCTCGTCTTCAAGAAGAGGTTAGGGATCAAGTGAAGACAAAAAGGGAAACAACTAAGAAGAAACTGAATTCTACAACTACAGTGACTGACATGAAACTCTGATTACTGAGTAAAGTTAGAACGTTTAATATCCACCATCAATACTAAGAATTCAAATGTTTTTGTAAGCTATTTAGGTTGCTGAAATTTTTCGGTAGCTTGTCTCCGTCCATGCTCCTGCGTTCTCTGCTCTTTTGTTCCGAATTAGACGCCCATCAGAATTGGAAATGTTAATTTTTGTCAGACACTGTAACTTTAGGTAAAGAATATGTAATAGTAActggactgagtggagtacaattcagggagaaATCGTGCGATTGAAAACAGCAATGGAGACCCCATCCAAGTGCCAGTGATTGACGCGCGAATGGCGTAAGTGTCCATTTACCGGTAGCTAATAgcacatttgcatgatgacgccatttgactacaagtaccagaatcctttaggttttgcttgtctcatgctaattggagctattgttatttttaccccaccgggaatacaaaatttaaataagctatcgtgaaagttggctatttggagttgttcaaaTTGTATACCTGAATTGGACACTCACTTGCTCGCTCGCCAATTACTTGACAAATAGGCGCgaaaagaaaccaatcagattcgagaattttgtaatagttacgattatatttttttattaggTGACAGAAACGATCTCTTCCCTGTAGGAACCATTCACCTCACTTCAATATAGAAGGAGGGAAGCTAGGCACCTTCGGGCTTTTCTCTCTTGACTCTTCCTGCGAGCAACCTGAAAAGGGATTAAACTAGGTATCCAGATATCAACTATATGACCAAAGCAATACAAGTCAGTCTTACCTCATCTTTTCCCCAAACTTTAGAAAGAAAGTATGTACTAAATTAGAACCTTTGAAGCCAGTTTGATTCTTTCGACAAACAAACTCGATTTCCATTTATAAGAAAGTGACATCGGCAAAGATTTCTCGATTGGTACATgcaagggttacgtttttgcaaacgttggccgtgtagtacTTATATTTCAACTGAATTGACtattagcacttcacattaccctccaatagtttTCTCAATTGATAAACTGCAGCCGAACGGAAGCCGTTTTTGTAAGCTAGAGAAAGTCACGACCAGAGTGCGATCCAACCAAACCAAGGTGCGAACCCCTTTTGGAACGCAAATCATCCGTGATCTAGTACATGCTTTGTAGatgcaaaaaataaagaattacACCTTGGAGGAACTTATTACCAGCA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O00566	U3 small nucleolar ribonucleoprotein protein MPP10 OS=Homo sapiens OX=9606 GN=MPHOSPH10 PE=1 SV=2
Q810V0	U3 small nucleolar ribonucleoprotein protein MPP10 OS=Mus musculus OX=10090 GN=Mphosph10 PE=1 SV=2
O13910	U3 small nucleolar ribonucleoprotein protein mpp10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=mpp10 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007102 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04006 all species →	Mpp10	Mpp10 protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012173 all species →	Family	U3 small nucleolar ribonucleoprotein complex, subunit Mpp10	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR17039 all species →	U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN MPP10	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005732 all species →	Cellular Component	sno(s)RNA-containing ribonucleoprotein complex	Interproscan
GO:0006364 all species →	Biological Process	rRNA processing	Interproscan
GO:0034457 all species →	Cellular Component	Mpp10 complex	Interproscan
GO:0032040 all species →	Cellular Component	small-subunit processome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14559	MPP10; U3 small nucleolar RNA-associated protein MPP10	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068726167.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

29TPM > 0

1Conditions

39.7Max TPM

16.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	29	16.01	39.67

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	39.67
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	39.52
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	30.26
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	29.26
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	28.54
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	27.90
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	26.28
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	25.84
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	25.75
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	19.75
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	19.41
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	18.21
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	18.04
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	17.98
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	16.84
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	16.69
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	16.33
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	16.28
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	16.22
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	16.13
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	15.35
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	15.34
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	15.28
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	11.79
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	11.63
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	11.47
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	11.42
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	10.42
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	8.83
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.