Gene detail

Detailed information of XP_068728043.1 in Montipora capricornis

Genomic Location: chr2:47937136...47980478
NR annotation: XP_044179267.1, histone-lysine N-methyltransferase EHMT2-like isoform X1 [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC138024726

ATGATGGATTTCAATGGTAATCATCGTCACCATGCCTATGCTCCACCAGCAGTTGGTCGTTTTTATCCCAGATTTCCGGCAAGAGAGTGGCATCCGCAAGACCATGGCCCCTTTCCTAATGCCTTTGGTAAAGGACAGAGAGGTCAATTCTCAGTCAGAGGAAGAGGATCGCATCGATCAGGAGAAAGAAAAATATACCGCTCTCCAATGGATCGTATTAGATTTGGAAGACCCAGTCAATCAACCCCTTCAAATGTTTTATCATTTCCATCAACAAGCTCCACAAGAATTCCAAACAATGTTAGCAACCCAAAAACAAAGACAACAGAATTTCCAGGCACATCTAAGGAGATGAGTGTCATTTATTGTGCTGCACAGAGTGAAACACTTTCAAGTTCAAAAGTTAATAGTGATTTGTCATGCAAAGATAAGGAGCCTTTCACCTCAGACGTTAGAAGCCCTTCCATTGCGAAAGTAGTACCCTTTAGTCACCAGCCATCAGTAAGCAGTGGAACATCTTCTGTTGGCACATCCAAACCCTCACCAGTGGAGAAAGTCTGTTCTAACACAATTTGTCAAAATGGGCCTGAAAGCCCAACTGTCTCCACTTGCCATTCACTGACAAGTCTCTGCAAAGTTAACCTTGCAGGTGAACATTGTCATGCTTCGAAGGATGGTCTCATGACTGTTTGTGCCCGTGATGAGGATGGTCACCTGCAACCCATTTTTACGACCATTTGTAGTTGCCAGCTTAGGAAGCGTGCTTTAAAATATGCCGACAAAGGAACTACAAGAGGTGACTCTATAGTTATAGACTCGGATGAGGAAGAAGACAGCAAGAGCAATATTGCCACTATCAAACTTGTTAATGAAGGTGCAGATGAAGTGTTACCGAGCACCGTTTCTCCAAGTGATTCGCCGAATGGTGAAGGGGAACCTAGTTTCCAAGAAACACCAAGAAAAAGAGCAAAAATGAGCACAACAAACGTAGCAGAAAAGATATCTTTTCCGGTTGGTAAAGCTACAACTGCTGGTAATGACCCAGGAGAAACAGACAAATCAAATAATGGCACATGTACAGAGACAATGGCAGGAACACTGGCAAAGATTGTAGAAGGGGTGCAACAGAATCTTCGTGAAGGATGCAGTAGCTCAACGTCATCTGATTCATTACTTCCATTGTCATCAAGCAATTTAATAGAGGATGCTCCACTGTTGTCAAATCCACAGATTCTTCAAAGACTTCTGGATGAATGTAACGAAATAGCCAAACCATTTAACAAATTAAAAGTATCCTCCAGGAATCTTTTGACAGCAGCAAAGGAGTGCAACGTTCACAAAGTTCTTGCCTTGTTGGTGGAAGGATGTGATCCAAACCAGCAAGTTGCAAAATCAAAGGGAAAGACAGCCATGCACGCTGCAGCCGCAGGCGGATATGTTGATATCATCGCTTGTTTAAGACTGGGTGGATGTGACTTGAATCTGTTGGACTACGACAACCGAACACCTCTGTTTGAAGCAGTGAACAATCACAAAGTCAAAGCTGTAGAGTACCTCATTGACTGTGGAGCAAATCTTACATTAACGGACACAAAAGGAATGACTTGTTTCCACGTTGCTGTTCGTCACGGACACATAGATCTTATTCAAGTTCTTCTCAAGACAGGACAGATTGATATCAATGATCAGGATGATGGAGGCTGGACCCCCATCATGTGGGCAGCAGAAGATAAACAGTATGACGCAACGCAGCTGTTGATTGAAAATGGAGCAAATCTTCACATAAGAGATCTGGAGTTGAATGTACCTCTGCACTGGGCTGCACTGTCAGGCAATATTGAAGTGTGTAAACTTCTACTGGATGAGCATACGGACATAAACAGTATCAACATACACAAGGAGACACCGCTACATATTGCTGCAAGAGAAGACCACTACGCATGTGTGCAGTTGTTTTTGAGTCGAGGGGCGAACATTCACATCCGCAACAAAGACGGTCACACACCTTGTGAGGTTGCCCATCCTGTATCTAGAGGATACTGCTTGCTGGACTCAAAAGCACAGTTAGAGTCGCGTCAAGGAGTTATTAGGCCGCGCATCTTACATAGTGACATTTCTCGTGGACAAGAAAATGTCTCAATATCTTGCATAAATGAGGTTGATGATGAACCATTTCCAAAGTTCACCTTTGTCAAGGAAAGCTGTGAGGTTTATGACGGACTGATCAACTGGAGTATCTCAAAATTCGAGGGTTGTAAGTGCGAGAATAGTTGTCAAAGCAGGAAGTCTTGTCATTGTTCTGAAAAGAGTGAACGGGAAAAAATTTGGTACAATAAGGACGGACTATTAAAAGGAGATTTACAGAAGTTTGACCGGCCTCTTATCTTTGAATGTAACAGAATGTGCAACTGTTGGTCATTCTGTAAGAACAGAGTTGTCCAAAAGGGTATGCAGTATCCTCTTCAGATGTTCAGAACGTTGAAAAAAGGATGGGGAGTCCGCAGTCTTGCTGTTATTCCTCAGGGCGGTTTTGTGTGTGAATACACTGGTGAGCTCATACCAGACAGCGAAGCGGATGACAGAGACGATGACTCTTACTTATTTGACTTGGACTGTAAGGAGAGCACGAGCGACTTGTTTTGCATTGATGCCAAAGAGTATGGAAACATCAGCCGATTCATAAATCACTCGTGCGAACCAAACATCTTTCCCTTGCGAGTATTTATTAATCACCGGGACATAAGATTTCCTAGAATTGCTTTCTTCGCCACAAAGGACATAAATCTGCACGAAGAAATTTGCTTTAATTACGGTGACAGATTCTGGTCTGTTAAAAAGAAGGAATTTTACTGTGAATGCGGTACACCGCGTTGCAAATATCGCAACCCAAGCTCTTAG

Transcript

rna-XM_068871942.1

ATTTCCAGGATCGATTGGCCTTTTTGACATGGTGACCATTTGGAGTCCCAAGAGACtgagaatttttgttttgcgcCCTCTGAACTTGCTTTCAAATACATCAACTGGAGGTTCGGAGTTTGCTAGATGATGGATTTCAATGGTAATCATCGTCACCATGCCTATGCTCCACCAGCAGTTGGTCGTTTTTATCCCAGATTTCCGGCAAGAGAGTGGCATCCGCAAGACCATGGCCCCTTTCCTAATGCCTTTGGTAAAGGACAGAGAGGTCAATTCTCAGTCAGAGGAAGAGGATCGCATCGATCaggagaaagaaaaatataccGCTCTCCAATGGATCGTATTAGATTTGGAAGACCCAGTCAATCAACCCCTTCAAATGTTTTATCATTTCCATCAACAAGCTCCACAAGAATTCCAAACAATGTTAGCAAcccaaaaacaaagacaacagaaTTTCCAGGCACATCTAAGGAGATGAGTGTCATTTATTGTGCTGCACAGAGTGAAACACTTTCAAGTTCAAAAGTTAATAGTGATTTGTCATGCAAAGATAAGGAGCCTTTCACCTCAGACGTTAGAAGCCCTTCCATTGCGAAAGTAGTACCCTTTAGTCACCAGCCATCAGTAAGCAGTGGAACATCTTCTGTTGGCACATCCAAACCCTCACCAGTGGAGAAAGTCTGTTCTAACACAATTTGTCAAAATGGGCCTGAAAGCCCAACTGTCTCCACTTGCCATTCACTGACAAGTCTCTGCAAAGTTAACCTTGCAGGTGAACATTGTCATGCTTCGAAGGATGGTCTCATGACTGTTTGTGCCCGTGATGAGGATGGTCACCTGCAACCCATTTTTACGACCATTTGTAGTTGCCAGCTTAGGAAGCGTGCTTTAAAATATGCCGACAAAGGAACTACAAGAGGTGACTCTATAGTTATAGACTCGGATGAGGAAGAAGACAGCAAGAGCAATATTGCCACTATCAAACTTGTTAATgaagGTGCAGATGAAGTGTTACCGAGCACCGTTTCTCCAAGTGATTCGCCGAATGGTGAAGGGGAACCTAGTTTCCAAGAAACACCAAGAAAAAGAGCAAAAATGAGCACAACAAACGTAGCAGAAAAGATATCTTTTCCGGTTGGTAAAGCTACAACTGCTGGTAATGACCCAGGAGAAACAGACAAATCAAATAATGGCACATGTACAGAGACAATGGCAGGAACACTGGCAAAGATTGTAGAAGGGGTGCAACAGAATCTTCGTGAAGGATGCAGTAGCTCAACGTCATCTGATTCATTACTTCCATTGTCATCAAGCAATTTAATAGAGGATGCTCCACTGTTGTCAAATCCACAGATTCTTCAAAGACTTCTGGATGAATGTAACGAAATAGCCAAACCatttaacaaattaaaagtATCCTCCAGGAATCTTTTGACAGCAGCAAAGGAGTGCAACGTTCACAAAGTTCTTGCCTTGTTGGTGGAAGGATGTGATCCAAACCAGCAAGTTGCAAAATCAAAGGGAAAGACAGCCATGCACGCTGCAGCCGCAGGCGGATATGTTGATATCATCGCTTGTTTAAGACTGGGTGGATGTGACTTGAATCTGTTGGACTACGACAACCGAACACCTCTGTTTGAAGCAGTGAACAATCACAAAGTCAAAGCTGTAGAGTACCTCATTGACTGTGGAGCAAATCTTACATTAACGGACACAAAAGGAATGACTTGTTTCCACGTTGCTGTTCGTCACGGACACATAGATCTTATTCAAGTTCTTCTCAAGACAGGACAGATTGATATCAATGATCAGGATGATGGAGGCTGGACCCCCATCATGTGGGCAGCAGAAGATAAACAGTATGACGCAACGCAGCTGTTGATTGAAAATGGAGCAAATCTTCACATAAGAGATCTGGAGTTGAATGTACCTCTGCACTGGGCTGCACTGTCAGGCAATATTGAAGTGTGTAAACTTCTACTGGATGAGCATACGGACATAAACAGTATCAACATACACAAGGAGACACCGCTACATATTGCTGCAAGAGAAGACCACTACGCATGTGTGCAGTTGTTTTTGAGTCGAGGGGCGAACATTCACATCCGCAACAAAGACGGTCACACACCTTGTGAGgttgccCATCCTGTATCTAGAGGATACTGCTTGCTGGACTCAAAAGCACAGTTAGAGTCGCGTCAAGGAGTTATTAGGCCGCGCATCTTACATAGTGACATTTCTCGTGGACAAGAAAATGTCTCAATATCTTGCATAAATGAGGTTGATGATGAACCATTTCCAAAGTTCACCTTTGTCAAGGAAAGCTGTGAGGTTTATGACGGACTGATCAACTGGAGTATCTCAAAATTCGAGGGTTGTAAGTGCGAGAATAGTTGTCAAAGCAGGAAGTCTTGTCATTGTTCTGAAAAGAGTGAACGGGAAAAAATTTGGTACAATAAGgACGGACTATTAAAAGGAGATTTACAGAAGTTTGACCGGCCTCTTATCTTTGAATGTAACAGAATGTGCAACTGTTGGTCATTCTGTAAGAACAGAGTTGTCCAAAAGGGTATGCAGTATCCTCTTCAGATGTTCAGAACGTTGAAAAAAGGATGGGGAGTCCGCAGTCTTGCTGTTATTCCTCAGGGCGGTTTTGTGTGTGAATACACTGGTGAGCTCATACCAGACAGCGAAGCGGATGACAGAGACGATGACTCTTACTTATTTGACTTGGACTGTAAGGAGAGCAcgagcgacttgttttgcattGATGCCAAAGAGTATGGAAACATCAGCCGATTCATAAATCACTCGTGCGAACCAAACATCTTTCCCTTGCGAGTATTTATTAATCACCGGGACATAAGATTTCCTAGAATTGCTTTCTTCGCCACAAAGGACATAAATCTGCACGAAGAAATTTGCTTTAATTACGGTGACAGATTCTGGTCTGTTAAAAAGAAGGAATTTTACTGTGAATGCGGTACACCGCGTTGCAAATATCGCAACCCAAGCTCTTAGCATCTGGTCTGTTTTCATACATTCATCCACACCTCACTTTCGTATTACATTCGTTAACGTATTGTAAGTATTTTAACCCATCGGATCCCGAGCTATAAGTTGTGTTGCTTGTTGGGTGGATAACATAATGACATCTTTCAAATTGTATTtagaattttattttatatctTCAAAAAAAATATCAGTGTAAATATACCTTTTAGCCTTTGTCCTAAAGGAAATaaattgctattattattattattattattattattattattattattattattattattattattattattattattattattattattattattattattattatatacaatatacatttattttagTGGTAAAATGTTTATTTGTCTCGTAAGTGGTTGCAGATTTGATCACTTGTTTCTTTTACTTTTGGAATATAACGACTAAAAATGCTTTATGAAACATTTTGTCTCCAGGATTGTGTAATAACAGTAATCTTTGGATGGTAAAATCGTGTTTTCAGATATACACTTTCACTACACATACGCTCTCAAGATTGAGAAAATGTGATAATATATCGTGTTAATTGTATTTGTATCTTGTTTTACTTTTAAACTTGCATTTATAGATTATTAATCCTTAGAATCCTTTGGTCTTCACTTATTTACCTAATACatgtacacttttttttttaaagattttcttattttgcgctgaggctgaacgttgtaatttattaatttaaattttatttttttgcgatttgagccCGAAAACATTCTTAACACTTTCTTAAAGTTGTGTGGTAGactaagttcgactacaaactgagttgttcttCAGTGTGTCATGTAATTAGAAACTAAACCTCACATTGTTAGTAACTAtattaataaccgagagtgaggtcgttacggcaaaatctcaaactgaggccttgcccaTCGCTCGATCAATACAGCTtggccgaggtttgagatttggCTGTAACGACCGAATGGtcaaggttattaagttgttcaTTATATGGTTAACAGAACGGTtctgaagaaggaaaaaaactaatttgcataatccataatcggccCGTGAGAATAATTATAATGCCCTAGCCAATCACCGCGCTCGTTAAATCGGTGAGAAACATTAGCCATATAATATTTACCGCTGGTTTTCAATAGcgtcggagtcgtaatcagaagcgcagagcgataagattccgcttatgactccgtcgcttatgatccagtgaaaactagattgtcggagttggaagcagaagcggaagaataaaccaatcacagtgctcgattccaagcattgttATTGGTTGGTTGTTCCACTtttgcttccgactccgacaatctagttttcgcTGGATCATAaacgacggagtcataagcggagtgGAAAGAAAATGAGAActttctgattcttccgactccagttacgactccgatctttgattttcattagcgctcttacgactccgtcgctagtgaaaaccagcctttagtaATActgaacagagttaactgaatagagtgtaatgtgaagtgctagatttcaatcccatatgaaccatgtg

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Z148	Histone-lysine N-methyltransferase EHMT2 OS=Mus musculus OX=10090 GN=Ehmt2 PE=1 SV=2
Q96KQ7	Histone-lysine N-methyltransferase EHMT2 OS=Homo sapiens OX=9606 GN=EHMT2 PE=1 SV=3
Q9H9B1	Histone-lysine N-methyltransferase EHMT1 OS=Homo sapiens OX=9606 GN=EHMT1 PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001185 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00856 all species →	SET	SET domain	Family	Interproscan
PF05033 all species →	Pre-SET	Pre-SET motif	Family	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF00023 all species →	Ank	Ankyrin repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001214 all species →	Domain	SET domain	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR007728 all species →	Domain	Pre-SET domain	Interproscan
IPR043550 all species →	Family	Histone-lysine N-methyltransferase EHMT1/EHMT2	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR046341 all species →	Homologous_superfamily	SET domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46307 all species →	G9A, ISOFORM B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0042054 all species →	Molecular Function	histone methyltransferase activity	Interproscan
GO:0000122 all species →	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0000785 all species →	Cellular Component	chromatin	Interproscan
GO:0002039 all species →	Molecular Function	p53 binding	Interproscan
GO:0006306 all species →	Biological Process	obsolete DNA methylation	Interproscan
GO:0016279 all species →	Molecular Function	protein-lysine N-methyltransferase activity	Interproscan
GO:0018027 all species →	Biological Process	peptidyl-lysine dimethylation	Interproscan
GO:0046974 all species →	Molecular Function	histone H3K9 methyltransferase activity	Interproscan
GO:0051570 all species →	Biological Process	obsolete regulation of histone H3-K9 methylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11420	EHMT; [histone H3]-lysine9 N-trimethyltransferase EHMT	EC:2.1.1.355	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068728043.1 across 36 RNA-seq samples of Montipora capricornis. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

0TPM > 0

1Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.