Gene detail

Detailed information of XP_068728107.1 in Montipora capricornis

Genomic Location: chr11:33846616...33952665
NR annotation: XP_015772588.1, PREDICTED: ferric-chelate reductase 1-like isoform X1 [Acropora digitifera]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC138024830

ATGAAACCTCGGACGCTTTCGGTTGTGTTTATTATACTGCTACAAGTAATTCAGCTACGGGCCTTCTCCAGTGGCCCCCCCTTGAGTACGTGTGAGTACATGACACCACACCATAGCGATACGAAAGGCCAATCTGGACCTTCCCCTTACAACATCACTGTGTCCAACAGTTCTTACAACCCTGGTGATAATCTTACAGTTAGCATTTCTGGATCAAAGAATTTTACGGGATTTATGTTGCAAGTCCAGAGTATCAATGCTTTTGTTCCTTGGCCAGTTGGAGAGTTTATTGAAATTGATAATGAAACAAAGAATATACATTGTTCCGGAGGTCAACCAAAGAATACTGTTGGTCACAACAATCCTGAAAAAGTCAAATGGACTTCTCGTCAGTTTACTTGGAAAGCCCCTCGGATGAGTGCTGGCGACATACACTTTGTTGCTACAATCGTAGAGAACTATTTCAAGTTTTGGGTTCGAGTAACATCGGCAGTTATTACCGGACCTCCCACTGAAAACATCACGAGAGGTACTCCCAGTGAAAGCTTCCAGATTAAAAAGAGTGGATGTGGAGACACTAAAGGATGTTACTCGCTTCCAACAACTTGTACTGGTAGTGCTGATTGCAACTATCTTTTTACTTACCAAGTTTCTGACGGAAATGTCACAATAGAAATGAGTGCAAAGGAAAGATATGTGTCTGTTGCCTTCAACGACCGGAAATTGATGGACAAAATGGATTCCATAATGTGTGCTACCATGGCAACAAACTTGGGAGAGTTACGCCATTATGATTCACATGGACATAGCGTGATCAGGAATACACTGCTTGGTCATCCTGATATTTCACTTCAGAAGATTGCTTTTGAAGATGGCACAATTAAGTGTAGGGTCATTCGTAAACTCTTCTCCAGCACACCTTTCTTCAAGAATTTGACAACGAAATGGTATCTTCTCTTTGCCCATGGAAAGACAAGTCCAAGTGGCAGTGGTCAATATCACCACAGCAATCGAAGTAATACTGCTGAGACTGTGGATCTTTCTGTGCCAGAAATACTTCTCGATGAGCAAAGTCAAGTCAAGGATAAGATCACTAAAGATGGATGTGGGGAAACAAAAATCTGCTATTCTGAGCCCAAGGACTGTAAAGCCAGCAGTGATTGCATCTATCTCTTGACAATCAGACAAGTGAAAGGCAAAGATGCCAATGATTCTGAGCAAGTGGAGTTCGAGATCAGTGGAAAGGGACAATGGATCTCTATTGGTTTTGATAAAGACAAGAAGATGCCCGATACTGATGCAATGATCTGCGCTGATGCCAATGGCCGTGTCTCTGTTGATCATTATCTGGCGGACAATAGATACGGTATACCTACCAAGACCCTGGAACCATCATCGCTTGTTAAGTTATTTGCAGAGTCCAAAGGTGGAGTTGTGAGCTGTCGATTTAAAAGAAACATGCGAGATCCAAAGATGGCGGACTTAACCCAGCAGTGGTATCTGGTGTACGCAAGTGGACCAATGCAACCCGGAGGTAGCACGATAGGTCAACACACAATTGATCCAAGGACAAGTCCACAAATGGTTGTCATTGGGAAAATCAGTGCTCTTACTGCCGATGTAAAGGACTCCAGTAAGATAAGTGCACATGGTGTACTGATGGTCATTGCATGGATTGGATTCGCTTCCCTTGGAATTTTCATGGCTCGCTACATGAAGGTGGCTTTTGGTGACAAAGAAATGCTGGGAACAAGGATTTGGTTCACATTTCACAGATCTTTCATGCTCCTGACAGTGGTGTTGACCATCATTTCTGTCATCCTTGTTTTTGTTGATGTGGGTGGCTGGAGTTACGGGGCTGGTGCCCACTCGTACACTGGCATAATCGTGGTATTGCTGGCTGTTATTCAACCAATAATCGCTTTGTTTAGACCTTCCCCTGGAGATGAAAAGCGTTACATTTTTAACTGGGCTCATCGTGGTGTTGGTCTATCCTCTCTTCTTGTGGCTGTGGTGACTGTTTTCCTTGGTATCCGTCTTGATGGTGCAGGGCTGAATAATACCGCTCTTTACATCATGATTGTCTATTGTGTGGGCGTGGCAATTGTGATCGTGTATGATGCATATATAAGTTTAAACAAGAGTGGCAAAGCCGGCTTCAAGTTGGTGAAGGGAGAAACAGATGAGAACCATGTTACACTGGAACCCAACTTCAAGTTGGTGAAGGGAGAAACAGATGAGAACCATGTTATACTGGAACCCATCGGTGGCAAGTTCATAGCTAGTCGCAAGTTCTTGTTGGGATTTCTGACACTCCTTGTATTTGGTGTAGTAGTTAGTCTTGTGGTACTGATAGCAGCTGGTGGGCAAGAAGGACACGATCATCTTCTTGATCATTAG

Transcript

rna-XM_068872006.1

acgtgggttccggtcttattacgtatgcttgagtttaaacggaaacagaaaagagaaaaccgtaaacagtagaaatggcgggttgaaagtgttcaaTAAACACGAATTTTAgtcttacacacaaagaaactcgagaaatgatcattggtttgctgtaagagcaagtgaagatgaaacctcggacgctttcgGTTGTGTTTATTATACTGCTACAAGTAATTCAGCTACGGGCCTTCTCCAGTGGCCCCCCCTTGAGTACGTGTGAGTACATGACACCACACCATAGCGATACGAAAGGCCAATCTGGACCTTCCCCTTACAACATCACTGTGTCCAACAGTTCTTACAACCCTGGTGATAATCTTACAGTTAGCATTTCTGGATCAAAGAATTTTACGGGATTTATGTTGCAAGTCCAGAGTATCAATGCTTTTGTTCCTTGGCCAGTTGGAGAGTTTATTGAAATTGATAATGaaacaaaGAATATACATTGTTCCGGAGGTCAACCAAAGAATACTGTTGGTCACAACAATCCTGAAAAAGTCAAATGGACTTCTCGTCAGTTTACTTGGAAAGCCCCTCGGATGAGTGCTGGCGACATACACTTTGTTGCTACAATCGTAGAGAACTATTTCAAGTTTTGGGTTCGAGTAACATCGGCAGTTATTACCGGACCTCCCACTGAAAACATCACGAGAGGTACTCCCAGTGAAAGCTTCCAGATTAAAAAGAGTGGATGTGGAGACACTAAAGGATGTTACTCGCTTCCAACAACTTGTACTGGTAGTGCTGATTGCAACTATCTTTTTACTTACCAAGTTTCTGACGGAAATGTCACAATAGAAATGAGTGCAAAGGAAAGATATGTGTCTGTTGCCTTCAACGACCGGAAATTGATGGACAAAATGGATTCCATAATGTGtgctaccatggcaacaaacTTGGGAGAGTTACGCCATTATGATTCACATGGACATAGCGTGATCAGGAATACACTGCTTGGTCATCCTGATATTTCACTTCAGAAGATTGCTTTTGAAGATGGCACAATTAAGTGTAGGGTCATTCGTAAACTCTTCTCCAGCACACCTTTCTTCAAGAATTTGACAACGAAATGGTATCTTCTCTTTGCCCATGGAAAGACAAGTCCAAGTGGCAGTGGTCAATATCACCACAGCAATCGAAGTAATACTGCTGAGACTGTGGATCTTTCTGTGCCAGAAATACTTCTCGATGAGCAAAGTCAAGTCAAGGATAAGATCACTAAAGATGGATGTGGGGAAACAAAAATCTGCTATTCTGAGCCCAAGGACTGTAAAGCCAGCAGTGATTGCATCTATCTCTTGACAATCAGACAAGTGAAAGGCAAAGATGCCAATGATTCTGAGCAAGTGGAGTTCGAGATCAGTGGAAAGGGACAATGGATCTCTATTGGTTTTGATAAAGACAAGAAGATGCCCGATACTGATGCAATGATCTGCGCTGATGCCAATGGCCGTGTCTCTGTTGATCATTATCTGGCGGACAATAGATACGGTATACCTACCAAGACCCTGGAACCATCATCGCTTGTTAAGTTATTTGCAGAGTCCAAAGGTGGAGTTGTGAGCTGTCGATTTAAAAGAAACATGCGAGATCCAAAGATGGCGGACTTAACCCAGCAGTGGTATCTGGTGTACGCAAGTGGACCAATGcAACCCGGAGGTAGCACGATAGGTCAACACACAATTGATCCAAGGACAAGTCCACAAATGGTTGTCATTGGGAAAATCAGTGCTCTTACTGCCGATGTAAAGGACTCCAGTAAGATAAGTGCACATGGTGTACTGATGGTCATTGCATGGATTGGATTCGCTTCCCTTGGAATTTTCATGGCTCGCTACATGAAGGTGGCTTTTGGTGACAAAGAAATGCTGGGAACAAGGATTTGGTTCACATTTCACAGATCTTTCATGCTCCTGACAGTGGTGTTGACCATCATTTCTGTCATCCTTGTTTTTGTTGATGTGGGTGGCTGGAGTTACGGGGCTGGTGCCCACTCGTACACTGGCATAATCGTGGTATTGCTGGCTGTTATTCAACCAATAATCGCTTTGTTTAGACCTTCCCCTGGAGATGAAAAgcgTTACATTTTTAACTGGGCTCATCGTGGTGTTGGTCTATCCTCTCTTCTTGTGGCTGTGGTGACTGTTTTCCTTGGTATCCGTCTTGATGGTGCAGGGCTGAATAATACCGCTCTTTACATCATGATTGTCTATTGTGTGGGCGTGGCAATTGTGATCGTGTATGATGCATATATAAGTTTAAACAAGAGTGGCAAAGCCGGCTTCAAGTTGGTGAAGGGAGAAACAGATGAGAACCATGTTACACTGGAACCCAACTTCAAGTTGGTGAAGGGAGAAACAGATGAGAACCATGTTATACTGGAACCCATCGGTGGCAAGTTCATAGCTAGTCGCAAGTTCTTGTTGGGATTTCTGACACTCCTTGTATTTGGTGTAGTAGTTAGTCTTGTGGTACTGATAGCAGCTGGTGGGCAAGAAGGACACGATCATCTTCTTGATCATTAGTTCAGTTCCTCAGTTGATTGGAGATCGTAATTTGAAGAAGTTGATTTTGTGCTGATCTGTAAAGGAGCTTTAACAGTGTTTTAGAGTCCAAGATGGTGAAGGCAGTGACATGGGTGTCTGAAGTAAAAACGGCATTTCACTTTCCAAGTGAATCATAGCATCACAAAAGACTATGGTCTGCTTGCACTAGCTGTCGCACGAGACCCTTTTTTACTCTTGTCTTTCATCACACCCGCAAATTAATCGATTGTTATTATGGGAACAATAAAAGCTGGTTTATTCA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8K385	Ferric-chelate reductase 1 OS=Mus musculus OX=10090 GN=FRRS1 PE=1 SV=1
Q6ZNA5	Ferric-chelate reductase 1 OS=Homo sapiens OX=9606 GN=FRRS1 PE=1 SV=2
Q6INU7	Putative ferric-chelate reductase 1 OS=Xenopus laevis OX=8355 GN=frrs1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000664 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03351 all species →	DOMON	DOMON domain	Domain	Interproscan
PF02014 all species →	Reeler	Reeler domain	Family	Interproscan
PF03188 all species →	Cytochrom_B561	Eukaryotic cytochrome b561	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005018 all species →	Domain	DOMON domain	Interproscan
IPR002861 all species →	Domain	Reeler domain	Interproscan
IPR006593 all species →	Domain	Cytochrome b561/ferric reductase transmembrane	Interproscan
IPR042307 all species →	Homologous_superfamily	Reeler domain superfamily	Interproscan
IPR051237 all species →	Family	Ferric-chelate Reductase and Defense	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45828 all species →	CYTOCHROME B561/FERRIC REDUCTASE TRANSMEMBRANE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016021 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_068728107.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068728107.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

30TPM > 0

1Conditions

102.3Max TPM

39.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	30	39.62	102.27

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	102.27
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	101.65
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	83.91
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	82.92
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	78.90
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	59.12
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	56.77
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	56.31
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	54.67
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	53.91
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	53.88
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	50.58
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	49.67
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	47.49
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	45.22
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	39.94
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	39.06
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	38.12
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	37.63
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	36.23
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	34.56
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	32.70
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	31.37
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	29.11
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	26.54
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	24.54
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	23.74
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	20.11
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	18.43
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	16.94
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.