Gene detail

Detailed information of XP_068728305.1 in Montipora capricornis

Genomic Location: chr11:10600949...10623068
NR annotation: XP_029184736.2, tetratricopeptide repeat protein 39B-like isoform X2 [Acropora millepora]
Species abbreviation MCAPR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_068872204.1

TAAACAGGCAACGTCTGGCCTGGGAAGATGGCCGACTACTCTGTCAGCTGAACTGAAAAAAAGGGcacgaaaaatgccaaaatgaAGAACATTTGTAAGCGGAAATGGATAGATCAAGCAAGGTTCAAAGTGCTCTTCCCATGGCTGAAGCCATTGCAATGGTCAATAGAACTTCAGAACTTTGCTTCTCAAACAACTTTCATCAAGCAAAGGAGGAGCTCGAACCTTGGGTTCAGCACAGCATGTACCATGCACTTGCATACAGTGGTATTATGTGCATTCAAGCTCTTCTGAAATTTGAACAACAAGCAATACAGAAGGCTGCCAAGAGCATCAAGCATGCATTGAATGTTTGTGAAAGACACAGAAAAAGGCCAAAGTGGTCGGAGACAATTTCAAGTTGGATTTGGAATCCTTCTTATGAGAATTTCACTGAAGACGAAAAGCATGCAGAGCTCTGTTACACAGAAAGTCTTCTCCTTGATTCTCTTGTCACCTTCATTCAGGATGACAATATCCTCAGTTTTGTTTGGGGAGCTTTCAAAATTCGGAGGAGCTACCAGAATTACAAAACTTGCCTTGAAATGGTTGTAAGCCAACATTGTTCTTCTCGTCGAGCTGTGGAAATGACAGACTTGGAGGCAGGGATTCACTTTGGCATTGGAGGATTTAATTTGGTCTTGTCTCTACTTCCACCTATTATCATCAAGTTGTTAGAGTGGGTTGGATTTTCTGGGGATAGGGTTTTAGGACTCAGTCACTTGCGAAAGGGCAGCAGATGTCAAAGCCTAAGGTCCCCATTGTGCTCTTTGCTTCTACTTGGTTATCACACTTGGATCATTCAGTACCTTGGAAATGGTGATGGTGATGTGGATTCATCAGAGGAAATTCTTCAGCCACTGCTCACCACATTTCCAAAGGGAGCTCTATTTCTATTTTTTGATGGGCGCATAAAGCATTCACGTGGAAGACTTGATGAGGCAATCAGTAGATACAAGCATTCCCTCACAGTTCAGTCAGATATAAAACAGTTTCATCACTTCTTCTACTGGGAGCTCATGTGGTGCTATGCATACAAAGGAGACTGGGTACAGGCCTATCGCTATGCTGGCACCTTATTCAGGGAGAGTTTATGGTCACGGacTGTATACTTGCACCTTAAGGGTTCATTTAAAGTTATGGCCAGACTTGTAAACCAAATAGTGACAAGACAAGATGAAGAAGAGCAAGACAAGGAAGAACATCTGTTTAGGCAGCTACCAGATTTCAAGCAACGTATTGGTGGTCAGAGCATTCCATTTGAGGACTTTGCAATACACAAAGCAAAGAAGTACTTTCAGCAAAATGGTCACTTGTTTCTTCCTGGATTGGAGCTTATTTATATTTGGAATGGTTTCAAAGTGCTTAATCACAGATCTGATTTAGTGGAACCTTTAATAGAGTTGGTGGAAATTTCTCTGCATAAACTGAAGCAGACTAAAGATAACAGAAATTATGTGGATGACTTGTGTTTGGGGAAACTGATCCTGGGAATGTGTTATCGTTGTTTGGACCAGAAAACAGAAGCCATGGAATGTCTGAAAAGCGCTTATAGTCAGTCAAAAGACATCAGCCATGATCTCTACCTGGCACCTTACACATGTGCAGAGATAGGCTTTCTTTACCTAGAACAGGGAGACTTTAACCAAGCAAAAGAATACTTGGAACGGGCAAGgAAACACCGTGATCACCTTTTGCAAAGTCTTTTGCACCTAAGAATCCATGCTGCTTTACAGAAAATTGAGGACAGGTACCATAAGGAGGTGCGGACAAACAAGCTTTTCCCCGTAAACCAACAACTTGCATTGAATGGAGACAGTTCGTTTTCAGGAAGTGAAGAGGATTTTTTTGATGCCGAAGAAGACTGTTCCAAATTGCTTCGCCACGATTCTAGCTCATCCTTTGATATTATAACTGATGATGAACTTGACTTTTTTATACAATATGAAGAAAATGCCTAATGGGTAAAGGAGCATGACTAACAAGAGATTTTTCCACATTCTGGCTCTGGAAAAATCGGGGCATgggaacaaaaataattaagaacAAACCAGGGTAGGAGGGGATGGCTAATTTCAGTTGAAGTGGTAATAGCATGATTAGGGTTAACCTgtgatcaggcgtacttttcttaaGTAGGGAGGGAGGTCATGATCGCAGGTTAGATTAGGGTAAGCAAAATGATTggccctattctggaataagaataaatcaTGTGGAGCGGTGATTTAAAACACAAACAGTATGTCTGGGAGTTTGAAGCAAcaagcattttagcaggtgtttgacaatttaatgtgaatctccataacttctattccatgtattcctattctggaatacagTCAATTGAATGTGACCCTAACGGTGTTACCAAATAAAGTAGACTGGTGTAcctgtatttttaaaatttatttttaaatcccTGAATCACGCTAcatggtttaaaaaaaattgttactaTCTCTTTTGTTAAAATTCAACTATCCAGGAGCaataataattcttattttACTTTTATGAAACAAAACACCAAACCCTTATCCTCAATAGAAGATTTAAGCAAATATTACATGCTTTTTCTGGGTGTTCTTACGACCTAATGAATAACCATCTTTGCAAGTAAtaaattaacacaaataaaaGTCCTATCCTGCTTTAAATACCTACTTTTTGTATAATAAATATTTAGCAGTATCATGGTTAGCCTATTGAAGGCATTCAGATAGAGCATTAGAGACTGTTGCATGATTGAAATACTGCACCTGTCAAATTTGCACAATCTGAATGCCAGCAGCAAGCAAATAATTATTGGTTCTCTTTTTTCCAGAGTATAgcgtaaaataataataagttaaAAGGACCTGCCTTATAAATTATAAATGAAACCACCTGGCATTTGCCTAAACTTAGATGTACGGGATATACAATGTAATTCCTGTGCCAGACACTTGGGGTCTTTTAAGAACAAGTTTGTAATGCTAAAGTATGATGGAgttattatttcttttgatGCAGCGTTAACACTCATGGCTTTTACACAGGTTTTATATCTGCTATTGGTCCTTTTGGCCTTTCTGGTAAACCATAGAGAAATGTAGCTGCTAATACACCACATGTACCAAGAAAGAAGAAActaaaataaagaataaaaaaaggaaaaaacaatgaaa

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
D3ZC96	Tetratricopeptide repeat protein 39B OS=Rattus norvegicus OX=10116 GN=Ttc39b PE=3 SV=1
Q5XHH9	Tetratricopeptide repeat protein 39B OS=Xenopus laevis OX=8355 GN=ttc39b PE=2 SV=1
Q28DB0	Tetratricopeptide repeat protein 39B OS=Xenopus tropicalis OX=8364 GN=ttc39b PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001963 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10300 all species →	Iml2-TPR_39	Iml2/Tetratricopeptide repeat protein 39	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019412 all species →	Family	Inclusion body clearance protein Iml2/Tetratricopeptide repeat protein 39	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31859 all species →	TETRATRICOPEPTIDE REPEAT PROTEIN 39 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24943	TTC39; tetratricopeptide repeat protein 39	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.