Gene detail

Detailed information of XP_068728311.1 in Montipora capricornis

Genomic Location: chr11:7616255...7621802
NR annotation: XP_029189491.2, hydroxysteroid dehydrogenase-like protein 2 [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6P5L8	Hydroxysteroid dehydrogenase-like protein 2 OS=Danio rerio OX=7955 GN=hsdl2 PE=2 SV=1
Q66KC4	Hydroxysteroid dehydrogenase-like protein 2 OS=Xenopus tropicalis OX=8364 GN=hsdl2 PE=2 SV=1
A4FUZ6	Hydroxysteroid dehydrogenase-like protein 2 OS=Bos taurus OX=9913 GN=HSDL2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002538 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02036 all species →	SCP2	SCP-2 sterol transfer family	Domain	Interproscan
PF00106 all species →	adh_short	short chain dehydrogenase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036527 all species →	Homologous_superfamily	SCP2 sterol-binding domain superfamily	Interproscan
IPR051935 all species →	Family	Hydroxysteroid dehydrogenase-like protein 2	Interproscan
IPR003033 all species →	Domain	SCP2 sterol-binding domain	Interproscan
IPR002347 all species →	Family	Short-chain dehydrogenase/reductase SDR	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42808 all species →	HYDROXYSTEROID DEHYDROGENASE-LIKE PROTEIN 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_068728311.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068728311.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

30TPM > 0

1Conditions

139.4Max TPM

86.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	30	86.65	139.42

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	139.42
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	132.38
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	128.68
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	127.89
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	125.20
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	124.01
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	119.30
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	117.45
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	112.02
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	109.95
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	109.87
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	109.63
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	109.62
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	108.38
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	107.86
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	104.30
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	104.23
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	103.40
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	103.18
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	99.88
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	98.18
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	97.08
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	96.64
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	94.48
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	88.38
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	83.80
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	71.34
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	67.79
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	67.27
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	57.67
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.