Gene detail

Detailed information of XP_068728443.1 in Montipora capricornis

Genomic Location: chr11:9328322...9333580
NR annotation: XP_029182465.2, transcription elongation factor A N-terminal and central domain-containing protein 2-like isoform X1 [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B0UYI1	Transcription elongation factor A N-terminal and central domain-containing protein 2 OS=Danio rerio OX=7955 GN=tceanc2 PE=3 SV=1
Q5XIC7	Transcription elongation factor A N-terminal and central domain-containing protein 2 OS=Rattus norvegicus OX=10116 GN=Tceanc2 PE=2 SV=1
Q8R2M0	Transcription elongation factor A N-terminal and central domain-containing protein 2 OS=Mus musculus OX=10090 GN=Tceanc2 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009250 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07500 all species →	TFIIS_M	Transcription factor S-II (TFIIS), central domain	Domain	Interproscan
PF08711 all species →	Med26	TFIIS helical bundle-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003617 all species →	Domain	Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type	Interproscan
IPR003618 all species →	Domain	Transcription elongation factor S-II, central domain	Interproscan
IPR017923 all species →	Domain	Transcription factor IIS, N-terminal	Interproscan
IPR035441 all species →	Homologous_superfamily	TFIIS/LEDGF domain superfamily	Interproscan
IPR036575 all species →	Homologous_superfamily	Transcription elongation factor S-II, central domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11477 all species →	TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006351 all species →	Biological Process	DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02956	RP-S15, MRPS15, rpsO; small subunit ribosomal protein S15	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068728443.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

27TPM > 0

1Conditions

23.6Max TPM

13.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	27	13.55	23.65

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	23.65
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	22.46
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	22.33
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	21.97
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	21.55
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	21.39
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	21.21
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	20.25
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	20.17
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	20.11
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	19.37
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	19.24
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	18.83
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	18.50
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	18.00
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	17.51
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	17.30
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	16.91
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	16.87
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	16.09
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	15.52
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	15.43
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	14.22
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	14.08
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	12.78
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	11.02
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	10.88
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.