Gene detail

Detailed information of XP_068730045.1 in Montipora capricornis

Genomic Location: chr12:20512499...20527549
NR annotation: XP_015758889.1, PREDICTED: ribonuclease Oy-like [Acropora digitifera]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_068873944.1

AGGCCACGTGGTTACGCAGAGACAATCAGTCGTAAACAAACTATCGAGGACAGCTAGGACAAAAAGAGGCTCTTTGCCACATGAGAACTTTTACGAAAACTCACGTGAGCGGAGAAGTCAAATGTCACGATAAATCCTTCCAAGAAGTTATCACATCTCACTGTTAGTTGGGTTCTTCAAACGAGAAGTGTTTTCGAGACATTTGATATCCCTGTTGATCCATCTGAGAAATCATGTTAGGGCAGATCATTGCGTTGGCTCTGCTTTGCCAACCGGTCGTCTCTCTCCATCTTCGCAGCTCCAGATCAGGGTATGGTCCTGACTTCAACCTGTTTGTTTTTACCCGGTGGTGGCCACAAACACAGTGCCAGATAAATGCAGATGCTGACTGGAGATTCACACAGCCATCACTGAACAAGACGTGTGTTCCACAAGGAATCACAGAGTGGACTATCCATGGATTGtgGCCTACTGTTGGAAAAGAGCATGCACCAGTATTCTGTAACAGCTCATGGCCCTTTGATGAATCTCTTGTAGAGGATTTGAGACCTCAGTTAGAGCAACAATGGCCTTCATTTGACAGAGACTATGACAATCCTGCATTTTGGAAACATGAATGGGAAAAGCATGGAACATGTTCCACTGATCTTGATTATTTGAACTCAGAGCATAAATATTTTGCTGTCACACTATTGTTAAATGGGTACTATGATTTATTCAGaGCCCTGGCAAAGAGTGGAATTACCCCATCTTCTGAGAAGACCTACAAGgTGAAGGATATTGAAAGTGCTCTCCAGGAATATTTTGGTGTTTATCCCATTGTGGAATGCCTTATCAAGGGCCCTGTTCAGATGTTAAGCTCTGTTGAGTTGTGCTTGGATAAACAGCTGAATTTGACCAACTGTCTGGAAAGCGCGCCAGAATGCAATTACGATAAAGTGGTGCAATATCCACCTATTGTCCCAGTTTATGATTTTGCGTAGGGACCCGCTATTAGCCGATCAGAAAATTCTAATATTAGTTCAAAACTTTTGAATGAGTATTAATTTGCATCGAGATATCTGTGGTTGTTTACTATTTACGAGCAGGCTCCTAACAGGAAATTCTTTGAGATTGCCATGTGCAATTAGATCTTTACGGAGAGAGAGGAAGACTTGGAAGGATAAAAATGGAACACGTActttctttttgcaaattcCAGTGGGAAATCTGGTCTGCCACTTGACCAGACTTTGTAATCTTTCCGGGAGATTTTGGCAAATGGTAAACAACTAGGATATTGAGTGATTTGATTTGAGACAGGTTTTGAGATAGGTAGGCCTTGTCAGAGTGGTCTTTGATCTAAAGTCAAGAGATTTTGGAGATTTTAGCTAAAATGGTCTTTTTTTGATCCTCTATTACAGGTCAGTCGAATAACAAtataataggccacttgcactaagaggtcacgtgaccaatgctttccttaaacagtgagttgtaatcttgctattgccaaaaattgacagaacacataaaaattatcttacacgcgaaatttgagacgaaacgcatttaagggagataatttatggtactttgatttttcaacaaagtaggaTGATTTGTcttgtccgccatgttggagggcatactcctgccctccaacatggcggccaaaactactttttgcttatatcttgttaaatgtttgatagttgagttcagatgtgccataaacgttaccacatcatcttttcaacattttccttgaagttcaagtgcaaaatttgtgtcagaaagcggtaattcataatttttaaaaaaaaatcaagttttggtcacgtgaccagctacggactttctcattttaagcaattggtgcgggtttgaaaaaccaaatcactattattttgtttaagagatgacccactaatagtgtttcgaaggcaaaatcatgtaactttcattttcataaaaacgatgtcacatgacctcttagtgcaagtggcctatttcaAAGCTTGAGCTTGGCGTGTGTATGTCTGTGTGTATGTTTAAACGTGTAGGCCATTGGAGACAGTGCGTTGCTCATTTCAACTTCTCAACTTCTCTCTTCAAATTATATAATTTGAAAAATAGCGTTTTAAGATGATCGAATATAGTGTTTACAAATACCAGATCATTCAGATGCATGGCGATGTTTTAGACGTTTGTATTATGACAGCAACTGTTGAGCGCATGCCAAACTCGCTCGTTTGCCAGACATTAAAgtgtcatttttatttta

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O00584	Ribonuclease T2 OS=Homo sapiens OX=9606 GN=RNASET2 PE=1 SV=2
Q7M329	Ribonuclease T2 OS=Sus scrofa OX=9823 GN=RNASET2 PE=1 SV=1
O61887	Ribonuclease T2 protein rnst-2 OS=Caenorhabditis elegans OX=6239 GN=rnst-2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004166 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00445 all species →	Ribonuclease_T2	Ribonuclease T2 family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001568 all species →	Family	Ribonuclease T2-like	Interproscan
IPR036430 all species →	Homologous_superfamily	Ribonuclease T2-like superfamily	Interproscan
IPR018188 all species →	Active_site	Ribonuclease T2, His active site 1	Interproscan
IPR033697 all species →	Family	Ribonuclease T2, eukaryotic	Interproscan
IPR033130 all species →	Active_site	Ribonuclease T2, His active site 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11240 all species →	RIBONUCLEASE T2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0004521 all species →	Molecular Function	RNA endonuclease activity	Interproscan
GO:0005576 all species →	Cellular Component	extracellular region	Interproscan
GO:0006401 all species →	Biological Process	RNA catabolic process	Interproscan
GO:0033897 all species →	Molecular Function	ribonuclease T2 activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01166	RNASET2; ribonuclease T2	EC:4.6.1.19	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068730045.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

31TPM > 0

1Conditions

145.2Max TPM

78.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	31	78.38	145.17

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	145.17
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	142.66
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	141.55
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	135.80
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	127.20
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	125.57
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	124.75
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	118.98
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	107.81
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	105.67
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	105.17
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	100.95
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	100.03
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	96.94
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	95.65
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	93.69
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	91.38
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	90.81
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	87.40
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	86.11
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	79.66
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	78.84
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	77.84
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	70.54
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	68.38
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	47.51
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	44.43
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	44.29
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	31.00
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	28.46
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	27.38
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.