Gene detail

Detailed information of XP_068730097.1 in Montipora capricornis

Genomic Location: chr12:9296028...9300298
NR annotation: XP_029202801.2, THUMP domain-containing protein 3-like [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_068873996.1

gaTTTCGTGACCGCTTACACGAGGTGAAATAGACACCATCTTCCCTAGTACAAATATGGCTGCTCCTGTGACAGTGTGTGCTACCGTTTCTACTGGATTTGAATCTGTAGCCGCGGGAGAGTGTAAAGAGAAGCTCGGCTCTACATCTGTGAGGGAAGGGAGAGGCCGCATATATTTTGAAATCCCAGTTAATTCGTTTCCTGAAATAAAAACTCTTCGGTCAGTTGAGCATCTTTTTGTTGTGGTGAAGGAATTTCAAGGCAACAACGAATTACTTGATTGCTTTAGTCCAGAGATTCTTGAAAAGTTCTACAAATTACCCCAAGAATTGAAGTGGGATCTAGCGCTTTCTTTATGGAAACAGTTTACAGGATATGCTGGCATACTCTTCAAAAGGGAACTCCCTCCTGATGAGGTGAAGTTTGAGGCTCTTAGTGCAGAGCACGCCGTAAAAAAAGACTGCCAGGATACAAGAAAAGATGGTGTTGATTTGAATGTGACTGAAAACGACAACAGAGAGGCTCCAGCAAAAAGAAGTAAGCACAACAATGAAGATTGTGACAAGGAGGAAGAGGTTAGGTTCGATTGCacattgaaaaaatatataccaTCTGGAAGTGAAAGCCTAATGTTACCTCGATTTCGTGTTACATGCACTCGTACTGGCAAAAAACACACCTTTTCATCCCCAGAGGCTGCTGCTAAATTTGGTGGAGGTATCAATGATTGGTTTGGTTGGCCTGTGGACCTGAGTAATCCAGACATTGAAGTTCTCCTTAACATTGTTGAAAGTAATGTAGTAATTGGTGTTGCACTGACAAAGGAAAGTAGAGGAAAAAGAAATATTGCTCACTTTGGTCCAACAACATTGAAATCTTCCATAGCATACTGCATGCTGAAGCTTGCAAACATCCAAACGGGTGAAGTTATTTGTGACCCTATGTGTGGAGGTGGATCCATTCCTATTGAAGCTGTTCTGAATTGGCCCACATGCATGCACTTGTGTGGAGACAATCATGAGCTGGCTCCTCCCAGAACACTAGCAAATGTTCGGAGTGCAGCTGGACAGCAGCAAAATAAATGGAAAACTCCCCCTCTTGATGTTTATCAGTGGAATGTTTGCAATCTTCCCCTGAAATCCAACAGTGttgatgtttttatttctgatttgcCCTTTGGCAAGAAAAGTGGGTCTAAACATGAAAACTGGAAGTTATACCCTGAAGCCCTTCAGGAAATGGCGCGGGTGTGTTGTGCAGGGTCTGGCAGGGCTGTGCTACTTACACAGGACAAGAGAGTGATGGGACAAGTTCTTAACAAAACAGTACAGTGGAAAAAGGACTTGACTTTGTGGATTAATATGGGAGGCTTAAAAGCAGGATTGTATGTGCTgtcaagaacaaaaaagtgataACTTGATTAACCACTTGAAATGCAGAATCCACAATCCTACAAGGAAACGTCCTGCCGGTTGGACTCAAGATTCATGACAAATTTCTGgacatgttgcaaaaagtaaagtacagaacattattatttttgtgatgatCATCTTACCAAAAGACTATTTTCAGCGACAACAAtgagtattttaaatttacaacaatgGCACTGTCCAGGCTGTGCTGATAAAATAAACTTCAGTGGAGCAAAATcatcaataatatttttattttacataaAATTCAACCCATATGAGTGATAAAAACCACACCACTGTATTACCTTATACAGTGGGACCTGCATTCAAGGGACACCTTCGGGAACAGGACAGGTTTTCCCTGAATAGAGCTTGGGTTGGATACAAAGATTAGTATCAATCATTTTTCTAGGACCAAATTCTGTCCCCTGAAGGGAGATGTCCCAAACGAGAGGTACCACTGTACTCTGTATTAGCATTCTCATTTCTTGCATATGTTCATTGCAGTGAAGTATCGAGCATATAGAGTGCACCTGTGTGACTTTGTAGCTCATTCTCTGATCCAGAGGTGATGGTTTCATTTCTCACCCTCaccagagtttttctttgtccttccTTGGGGCCATTTACATTTctagggctaatgctcaaatGGATTATGTGGAAATAAAGATGGCACTTGAATGTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2T9W2	tRNA (guanine(6)-N(2))-methyltransferase THUMP3 OS=Bos taurus OX=9913 GN=THUMPD3 PE=2 SV=1
Q9BV44	tRNA (guanine(6)-N(2))-methyltransferase THUMP3 OS=Homo sapiens OX=9606 GN=THUMPD3 PE=1 SV=1
P97770	tRNA (guanine(6)-N(2))-methyltransferase THUMP3 OS=Mus musculus OX=10090 GN=Thumpd3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008111 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01170 all species →	UPF0020	Putative RNA methylase family UPF0020	Domain	Interproscan
PF02926 all species →	THUMP	THUMP domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR000241 all species →	Domain	Ribosomal RNA large subunit methyltransferase K/L-like, methyltransferase domain	Interproscan
IPR004114 all species →	Domain	THUMP domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14911 all species →	THUMP DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016423 all species →	Molecular Function	tRNA (guanine) methyltransferase activity	Interproscan
GO:0030488 all species →	Biological Process	tRNA methylation	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_068730097.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068730097.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

29TPM > 0

1Conditions

2,083.9Max TPM

75.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	29	75.40	2,083.95

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	2,083.95
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	29.91
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	28.77
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	28.63
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	26.86
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	26.65
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	25.72
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	25.72
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	25.36
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	25.35
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	24.70
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	23.96
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	23.43
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	22.59
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	22.08
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	21.89
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	21.47
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	21.43
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	21.06
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	20.60
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	20.44
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	19.37
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	19.33
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	18.96
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	18.49
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	17.58
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	17.48
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	16.55
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	16.25
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.