Genomic Location: chr2:51889473...51897151
NR annotation: XP_029196235.1, cyclin-dependent kinase 9-like isoform X1 [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families
| CDS |
| LOC138026586 |
| Transcript |
| rna-XM_068873998.1 |
| Protein |
| XP_068730099.1 |
| UniProt accession | Description |
|---|---|
| Q5ZKN1 | Cyclin-dependent kinase 9 OS=Gallus gallus OX=9031 GN=CDK9 PE=2 SV=1 |
| Q6GLD8 | Cyclin-dependent kinase 9 OS=Xenopus tropicalis OX=8364 GN=cdk9 PE=2 SV=1 |
| P50750 | Cyclin-dependent kinase 9 OS=Homo sapiens OX=9606 GN=CDK9 PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001984 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF12330 all species → | Haspin_kinase | Haspin like kinase domain | Family | Interproscan |
| PF00069 all species → | Pkinase | Protein kinase domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000719 all species → | Domain | Protein kinase domain | Interproscan |
| IPR011009 all species → | Homologous_superfamily | Protein kinase-like domain superfamily | Interproscan |
| IPR050108 all species → | Family | Cyclin-dependent kinase | Interproscan |
| IPR008271 all species → | Active_site | Serine/threonine-protein kinase, active site | Interproscan |
| IPR017441 all species → | Binding_site | Protein kinase, ATP binding site | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR24056 all species → | CELL DIVISION PROTEIN KINASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004672 all species → | Molecular Function | protein kinase activity | Interproscan |
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0006468 all species → | Biological Process | protein phosphorylation | Interproscan |
| GO:0000307 all species → | Cellular Component | cyclin-dependent protein kinase holoenzyme complex | Interproscan |
| GO:0004674 all species → | Molecular Function | protein serine/threonine kinase activity | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0008024 all species → | Cellular Component | cyclin/CDK positive transcription elongation factor complex | Interproscan |
| GO:0008353 all species → | Molecular Function | RNA polymerase II CTD heptapeptide repeat kinase activity | Interproscan |
| GO:0030332 all species → | Molecular Function | cyclin binding | Interproscan |
| GO:0032968 all species → | Biological Process | positive regulation of transcription elongation by RNA polymerase II | Interproscan |
| GO:0070816 all species → | Biological Process | obsolete phosphorylation of RNA polymerase II C-terminal domain | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K02211 | CDK9; cyclin-dependent kinase 9 | EC:2.7.11.22 EC:2.7.11.23 | Transcription machinery | ko03021 | deepkoala |
Transcript abundance of XP_068730099.1 across 36 RNA-seq samples of Montipora capricornis. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| Polyps | 36 | 0 | 0.00 | 0.00 |
| SRA run | Condition | Tissue | Developmental stage | Treatment | Study | TPM |
|---|---|---|---|---|---|---|
| SRR12710846 | Polyps | Polyps | OA3 day3 | not recorded | SRP199550 | 0.00 |
| SRR12710847 | Polyps | Polyps | OA3 day3 | not recorded | SRP199550 | 0.00 |
| SRR12710848 | Polyps | Polyps | OA3 day3 | not recorded | SRP199550 | 0.00 |
| SRR12710855 | Polyps | Polyps | OA3 day9 | not recorded | SRP199550 | 0.00 |
| SRR12710857 | Polyps | Polyps | OA3 day9 | not recorded | SRP199550 | 0.00 |
| SRR12710858 | Polyps | Polyps | OA3 day9 | not recorded | SRP199550 | 0.00 |
| SRR12786896 | Polyps | Polyps | OA3 day0 | not recorded | SRP199550 | 0.00 |
| SRR12786897 | Polyps | Polyps | OA3 day0 | not recorded | SRP199550 | 0.00 |
| SRR12786898 | Polyps | Polyps | OA3 day0 | not recorded | SRP199550 | 0.00 |
| SRR12807381 | Polyps | Polyps | OA3 day0 | not recorded | SRP199550 | 0.00 |
| SRR12849113 | Polyps | Polyps | OA3 day0 | not recorded | SRP199550 | 0.00 |
| SRR12904781 | Polyps | Polyps | not recorded | not recorded | SRP199550 | 0.00 |
| SRR12904782 | Polyps | Polyps | not recorded | not recorded | SRP199550 | 0.00 |
| SRR12904783 | Polyps | Polyps | not recorded | not recorded | SRP199550 | 0.00 |
| SRR12927880 | Polyps | Polyps | E3 day0 | not recorded | SRP199550 | 0.00 |
| SRR12959182 | Polyps | Polyps | E3 day0 | not recorded | SRP199550 | 0.00 |
| SRR12959183 | Polyps | Polyps | E3 day0 | not recorded | SRP199550 | 0.00 |
| SRR12959184 | Polyps | Polyps | E3 day0 | not recorded | SRP199550 | 0.00 |
| SRR12959188 | Polyps | Polyps | E3 day21 | not recorded | SRP199550 | 0.00 |
| SRR12959189 | Polyps | Polyps | E3 day21 | not recorded | SRP199550 | 0.00 |
| SRR12959190 | Polyps | Polyps | E3 day21 | not recorded | SRP199550 | 0.00 |
| SRR12959201 | Polyps | Polyps | E3 day15 | not recorded | SRP199550 | 0.00 |
| SRR12959202 | Polyps | Polyps | E3 day15 | not recorded | SRP199550 | 0.00 |
| SRR12959203 | Polyps | Polyps | E3 day15 | not recorded | SRP199550 | 0.00 |
| SRR12959214 | Polyps | Polyps | E3 day9 | not recorded | SRP199550 | 0.00 |
| SRR12959215 | Polyps | Polyps | E3 day9 | not recorded | SRP199550 | 0.00 |
| SRR12959216 | Polyps | Polyps | E3 day9 | not recorded | SRP199550 | 0.00 |
| SRR12959227 | Polyps | Polyps | E3 day3 | not recorded | SRP199550 | 0.00 |
| SRR12959229 | Polyps | Polyps | E3 day3 | not recorded | SRP199550 | 0.00 |
| SRR12959230 | Polyps | Polyps | E3 day3 | not recorded | SRP199550 | 0.00 |
| SRR12963484 | Polyps | Polyps | E3 day0 | not recorded | SRP199550 | 0.00 |
| SRR27940191 | Polyps | Polyps | not recorded | not recorded | SRP199550 | 0.00 |
| SRR27940192 | Polyps | Polyps | not recorded | not recorded | SRP199550 | 0.00 |
| SRR27940193 | Polyps | Polyps | not recorded | not recorded | SRP199550 | 0.00 |
| SRR9129316 | Polyps | Polyps | not recorded | not recorded | SRP199550 | 0.00 |
| SRR9613519 | Polyps | Polyps | not recorded | not recorded | SRP199550 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM,
StringTie quantification over 36 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
Genes whose expression across the transcriptome samples of Montipora capricornis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
| Direction | Partners | Most correlated partner | PCC |
|---|---|---|---|
| Positively correlated | 0 | not in this network | - |
| Negatively correlated | 0 | not in this network | - |
This gene has no edge at all in the Montipora capricornis network, in either direction — it is not one of the genes the network was built from (the network covers genes with enough expression variation across the transcriptome samples). The counts above are a property of the network, not a failed lookup.
Open this gene in Network Analysis → The network opens with the gene already entered and both directions selected. There you can add up to 9 more genes, switch between the positive and negative network, and export the edge list.
Whether this gene can be visualised in the single-cell atlases of Montipora capricornis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
