Detailed information of XP_068730102.1 in Montipora capricornis

Genomic Location: chr12:9450039...9515506
NR annotation: XP_044177052.1, anaphase-promoting complex subunit 1-like isoform X2 [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9H1A4Anaphase-promoting complex subunit 1 OS=Homo sapiens OX=9606 GN=ANAPC1 PE=1 SV=1
P53995Anaphase-promoting complex subunit 1 OS=Mus musculus OX=10090 GN=Anapc1 PE=1 SV=2
Q54NC6Anaphase-promoting complex subunit 1 OS=Dictyostelium discoideum OX=44689 GN=anapc1 PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002209 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF20518
all species →
Apc1_MidNAnaphase-promoting complex subunit 1 middle domainRepeatInterproscan
PF12859
all species →
ANAPC1Anaphase-promoting complex subunit 1 WD40 beta-propeller domainRepeatInterproscan
PF18122
all species →
APC1_CAnaphase-promoting complex sub unit 1 C-terminal domain DomainInterproscan
PF21282
all species →
APC1_3rdAPC1 beta sandwich domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR046794
all species →
DomainAnaphase-promoting complex subunit 1, middle domainInterproscan
IPR049255
all species →
DomainAnaphase-promoting complex subunit 1, N-terminal domainInterproscan
IPR041221
all species →
DomainAnaphase-promoting complex subunit 1, C-terminalInterproscan
IPR011989
all species →
Homologous_superfamilyArmadillo-like helicalInterproscan
IPR024990
all species →
FamilyAnaphase-promoting complex subunit 1Interproscan
IPR048971
all species →
DomainAnaphase-promoting complex subunit 1, beta-sandwich domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12827
all species →
MEIOTIC CHECKPOINT REGULATOR TSG24 FAMILY MEMBERInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005680
all species →
Cellular Componentanaphase-promoting complexInterproscan
GO:0007091
all species →
Biological Processmetaphase/anaphase transition of mitotic cell cycleInterproscan
GO:0031145
all species →
Biological Processanaphase-promoting complex-dependent catabolic processInterproscan
GO:0060090
all species →
Molecular Functionmolecular adaptor activityInterproscan
GO:0070979
all species →
Biological Processprotein K11-linked ubiquitinationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K03348APC1, ANAPC1; anaphase-promoting complex subunit 1-Chromosome and associated proteinsko03036deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068730102.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples
27TPM > 0
1Conditions
17.2Max TPM
5.5Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
Polyps 36 27 5.52 17.17

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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