Gene detail

Detailed information of XP_068731271.1 in Montipora capricornis

Genomic Location: chr12:14735510...14743972
NR annotation: XP_029195052.1, radial spoke head protein 9 homolog [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2KIU7	Radial spoke head protein 9 homolog OS=Bos taurus OX=9913 GN=RSPH9 PE=2 SV=1
Q9H1X1	Radial spoke head protein 9 homolog OS=Homo sapiens OX=9606 GN=RSPH9 PE=1 SV=1
Q5TYW6	Radial spoke head protein 9 homolog OS=Danio rerio OX=7955 GN=rsph9 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008897 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04712 all species →	Radial_spoke	Radial spokehead-like protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006802 all species →	Family	Radial spokehead-like protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22069 all species →	MITOCHONDRIAL RIBOSOMAL PROTEIN S18	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005930 all species →	Cellular Component	axoneme	Interproscan
GO:0035082 all species →	Biological Process	axoneme assembly	Interproscan
GO:0044458 all species →	Biological Process	motile cilium assembly	Interproscan
GO:0060294 all species →	Biological Process	cilium movement involved in cell motility	Interproscan
GO:0001534 all species →	Cellular Component	radial spoke	Interproscan
GO:0060271 all species →	Biological Process	cilium assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19757	RSPH9; radial spoke head protein 9	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068731271.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

30TPM > 0

1Conditions

210.4Max TPM

106.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	30	106.83	210.38

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	210.38
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	193.51
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	192.91
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	176.00
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	167.14
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	163.90
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	147.73
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	141.20
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	140.14
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	139.80
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	132.42
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	126.33
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	125.09
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	123.22
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	122.48
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	120.90
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	120.39
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	116.09
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	114.28
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	113.83
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	111.24
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	105.83
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	105.36
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	104.16
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	99.85
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	94.19
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	90.68
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	89.21
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	78.94
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	78.59
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.