Gene detail

Detailed information of XP_068731320.1 in Montipora capricornis

Genomic Location: chr12:10975363...10997167
NR annotation: XP_044163101.1, nuclear valosin-containing protein-like [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC138027658

ATGGATCGCAAGAAACAAGAGAGACGTGTCGGGAAAAACCAGCTTCCAAAGGGGGCTTACATTTTGGATAAACGGCTTGCTCCACGAGTGGAACAGTATTTAAACCAGTTTAGAATAGGTCACAGACCAGATGTTGAAGAAATTGTTAGTCATTTGCAGACAAGGTATAGTGAGTACTCTAGAAGAAAAAGAAGGGCATTTAAGATATCTGTAGAGAAAGTTTACAATGCCATTGCTAAGGACAGACAAAGAGACGAGCATCTTCAGCAGCTTGAAGAGAAATTTCTTCAGAAAAAGAGAAAATCGCCATCTTTCAGAGATTTACAGGATGCAAGTAAAAGTGATAGTAGTGACGAGGATAAGGACAGTACTGCAAAGAGTTTGGGTACATCCAGTGACTCAGAATTTTCCCTGGAAGATGACCCATTAATGGTTATGCAGGAAACAAATCTGATGAACCAGTCCATGCAAACTATGTACAAGGTGACAGGTTCTAAAGATGAGAGAGAAGACAATAATTTGGTGACTGTTAGATCTATTCAAGATCTCAACAAAGAAGTAGGAAGGACATTTCAAGGAGAGGACTTGTTCCACGTTGATTGCAATAAATCAACCCCAAGTGTGGACTCATCTGGTCAAAATCAAGAGATTCTATCCAGCAAGATGAGCATGTCTGAAAACCCTTCACCGCTAACCAAGCTAAAGCATACAAAATCAATGGTCAGGAATAAAAGAAAGAGGGTTCTAAGTGAGAAGGAGAAAAAGACAGATGTGTCTACACCCAAGAAAATCAGGAAAAGTTTGAGTAAGAAGGAAAAAGAGAAAATTGATGAAGATTTTGAGCCACCTCAATCTTCAGCCAAATTTTCTGACCTTGGAGGCTGTGAAGAGACTGTTGAACAAGTTTGCAAACTTTTGGTTCATATGAGGCACCCAGAAGTGTTCCATACCATTGGAGTGACCCCGCCCAGAGGGTTTCTTCTACATGGCCCTCCTGGCTGTGGCAAGACCCTATTGGCTCATGCCATTGCAGGGGAGTTGGAAATGCCATTTATCAAACTTGCAGCCACAGAGATAGTTTCAGGTGTCTCTGGGGAATCAGAAGAGAAAGTCCGAGAACTCTTTTCACGAGCAGTGATGCATTCACCCTGCGTGTTGTTCCTTGACGAAATTGATGCCATCACACCTAAGCGAGAAACTGCCTCCAAAGACATGGAACGGAGGATTGTGTCACAGCTCCTAACATCTATGGATGATCTCAACAATGATCCTGAAGCTCGTGTACTTGTGATAGGAGCCACCAACCGGCCAGACTCACTTGACCCTGCCCTGCGCCGTGCAGGACGATTTGACAAGGAGATCTCAATGGGTATCCCTGATGAAAAGGCGAGAAAGAGGATTCTGCAAGTTCAGTGTGAAAAGTTAAGGTTGGAAGACAGCTTTGATTTTGCGTCATTGGCTCGTCTCACTCCTGGGTTTGTTGGGGCAGATCTTATGTCCCTGACAAGAGAAGCTGCTTTGATTGCAGTAAACAGGATATTTCAAGAACTACAAAGAAATACTAACCTTGGGGAAAATACTTTACAAACTGAAAAACAAAGTAATTCTTGTGGAGACACGAAAGGCACCTTAGAGAGAACACCGAGAGCATTCAGTGCAATAAACTGGCTGAAGGAACAATCGCCACTGACTCCAGATGATTTGCAGACGATGTGTATAAACATGGACGATTTCAGAGGAGCGCTTCTGACAGTCCAACCGTCCGCCAAGAGGGAAGGGTTCGCTACCATCCCAGATGTGACATGGGAGGACGTTGGCGCGCTCAAGGATGTTAGAGAAGAACTTACAATGGCAATACTGGCTCCTGTGAAGTACCCCGAAGAGTTTCAAACGTTTGGTCTCACTCATCCTCCGGGTATACTATTGGCTGGGCCTCCCGGATGCGGCAAAACGCTTCTTGCAAAGGCGATAGCTAATGAATCAGGCATAAACTTCATCTCTGTCAAGGGACCTGAATTGCTTAACATGTATGTTGGAGAAAGTGAGAAAGCAGTCAGGCAGGTTTTCCAGAGAGCGAGGAATTCCGTCCCATGCGTCATCTTCTTCGATGAGCTTGATGCACTCTGTCCCCGAAGGTCGGACAGCTCTGAGTCCAGCGTGAGTGTCCGTGTTGTGAATCAACTTCTGACTGAAATGGATGGACTGGAAGCAAGGAAGCAAGTGTTCATCATGGCGGCTACAAACAGACCAGATATCATTGACCCGGCCGTGCTAAGACCTGGCCGACTTGATAAAGTTCTCTATGTTGGTTTGCCCAATGAGGAAGATAGAGAAGACATTTTGAGAACACTTACCAAGAACGGCAAGAAGCCTATGCTGTTACCAGATGTCAGTATCAAAGAGCTTGCAAAGGACCAAAAATGCCAAGGACTATCGGGTGCTGATTTAGCGGCCTTGGTGCGAGAGGCCAGTATGGCGGCTTTACGAGAATGCATCACCGCTCGATCCACAAATCACGTGACTCTTGTAAATAACCCGCCCGAGGTGCAGACTCTTGTCGGGGTGGGTGGACGACATTTTACTGCAGCCTTTCAAAAAGTGAATCCTTCAGTTAGCAAGAAGGATCAAACTTTGTACGGTAAAATGAAGAATCTGACACCAAAATAA

Transcript

rna-XM_068875219.1

TCTGTTTTTTGCTGGTGCGCGTTGTGTTAGATTCTCTTTCGTTCTCTCAAATGTGATTACGATTTAGTTGAAATTAGATTAAAGGAGGTCAAGTATAAAAGTTGAGCGAGATTTTCTGAGTGGCGTGAGACATGGATCGCAAGAAACAAGAGAGACGTGTCGGGAAAAACCAGCTTCCAAAGGGGGCTTACATTTTGGATAAACGGCTTGCTCCACGAGTGGAacagtatttaaaccAGTTTAGAATAGGTCACAGACCAGATGTTGAAGAAATTGTTAGTCATTTGCAGACAAGGTATAGTGAGTACTCTAGAAGAAAAAGAAGGGCATTTAAGATATCTGTAGAGAAAGTTTACAATGCCATTGCTAAGGACAGACAAAGAGACGAGCATCTTCAGCAGcttgaagagaaatttcttcagaaaaagagaaaatcgcCATCTTTCAGAGATTTACAGGATGCAAGTAAAAGTGATAGTAGTGACGAGGATAAGGACAGTACTGCAAAGAGTTTGGGTACATCCAGTGACTCAGAATTTTCCCTGGAAGATGACCCATTAATGGTTATGCAGgaAACAAATCTGATGAACCAGTCCATGCAAACTATGTACAAGGTGACAGGTTCTAAAGATGAGAGAGAAGACAATAATTTGGTGACTGTTAGATCTATTCAAGATCTCAACAAAGAAGTAGGAAGGACATTTCAAGGAGAGGACTTGTTCCACGTTGATTGCAATAAATCAACCCCAAGTGTGGACTCATCTGGTCAAAATCAAGAGATTCTATCCAGCAAGATGAGCATGTCTGAAAACCCTTCACCGCTAACCAAGCTAAAGCATACAAAATCAATGGTCAGGAATAAAAGAAAGAGGGTTCTAAGTGAGAAGGAGAAAAAGACAGATGTGTCTACACCCAAGAAAATCAGGAAAAGTTTGAGTaagaaggaaaaagagaaaattgatGAAGATTTTGAGCCACCTCAATCTTCAGCCAAATTTTCTGACCTTGGAGGCTGTGAAGAGACTGTTGAACAAGTTTGCAAACTTTTGGTTCATATGAGGCACCCAGAAGTGTTCCATACCATTGGAGTGACCCCGCCCAGAGGGTTTCTTCTACATGGCCCTCCTGGCTGTGGCAAGACCCTATTGGCTCATGCCATTGCAGGGGAGTTGGAAATGCCATTTATCAAACTTGCAGCCACAGAGATAGTTTCAGGTGTCTCTGGGGAATCAGAAGAGAAAGTCCGAGAACTCTTTTCACGAGCAGTGATGCATTCACCCTGCGTGTTGTTCCTTGACGAAATTGATGCCATCACACCTAAGCGAGAAACTGCCTCCAAAGACATGGAACGGAGGATTGTGTCACAGCTCCTAACATCTATGGATGATCTCAACAATGATCCTGAAGCTCGTGTACTTGTGATAGGAGCCACCAACCGGCCAGACTCACTTGACCCTGCCCTGCGCCGTGCAGGACGATTTGACAAGGAGATCTCAATGGGTATCCCTGATGAAAAGGCGAGAAAGAGGATTCTGCAAGTTCAGTGTGAAAAGTTAAGGTTGGAAGACAGCTTTGATTTTGCGTCATTGGCTCGTCTCACTCCTGGGTTTGTTGGGGCAGATCTTATGTCCCTGACAAGAGAAGCTGCTTTGATTGCAGTAAACAGGATATTTCAAGAACTACAAAGAAATACTAACCTTGGGGAAAATACTTTACaaactgaaaaacaaagtaattCTTGTGGAGACACGAAAGGCACCTTAGAGAGAACACCGAGAGCATTCAGTGCAATAAACTGGCTGAAGGAACAATCGCCACTGACTCCAGATGATTTGCAGACGATGTGTATAAACATGGACGATTTCAGAGGAGCGCTTCTGACAGTCCAACCGTCCGCCAAGAGGGAAGGGTTCGCTACCATCCCAGATGTGACATGGGAGGACGTTGGCGCGCTCAAGGATGTTAGAGAAGAACTTACAATGGCAATACTGGCTCCTGTGAAGTACCCCGAAGAGTTTCAAACGTTTGGTCTCACTCATCCTCCGGGTATACTATTGGCTGGGCCTCCCGGATGCGGCAAAACGCTTCTTGCAAAGGCGATAGCTAATGAATCAGGCATAAACTTCATCTCTGTCAAGGGACCTGAATTGCTTAACATGTATGTTGGAGAAAGTGAGAAAGCAGTCAGGCAGGTTTTCCAGAGAGCGAGGAATTCCGTCCCATGCGTCATCTTCTTCGATGAGCTTGATGCACTCTGTCCCCGAAGGTCGGACAGCTCTGAGtccaGCGTGAGTGTCCGTGTTGTGAATCAACTTCTGACTGAAATGGATGGACTGGAAGCAAGGAAGCAAGTGTTCATCATGGCGGCTACAAACAGACCAGATATCATTGACCCGGCCGTGCTAAGACCTGGCCGACTTGATAAAGTTCTCTATGTTGGTTTGCCCAATGAGGAAGATAGAGAAGACATTTTGAGAACACTTACCAAGAACGGCAAGAAGCCTATGCTGTTACCAGATGTCAGTATCAAAGAGCTTGCAAAGGACCAAAAATGCCAAGGACTATCGGGTGCTGATTTAGCGGCCTTGGTGCGAGAGGCCAGTATGGCGGCTTTACGAGAATGCATCACCGCTCGATCCACAAATCACGTGACTCTTGTAAATAACCCGCCCGAGGTGCAGACTCTTGTCGGGGTGGGTGGACGACATTTTACTGCAGCCTTTCAAAAAGTGAATCCTTCAGTTAGCAAGAAGGATCAAACTTTGTACGGTAAAATGAAGAATCTGACACCAAAATAAAGCTCGACGTTTCTTGGTGATCATGGAGCGTTGAAGATCATTACGTATGATTGCCTGTCAAACTGCAAACCGAAGAAAAACCGCCGCAAACGAACCTAAAGCTCTTATTCCAAGGCGTTGTTGGCACAAAATGCAAAGTCAGGCAGTGGAGTGAAGAATACCCACGAACATtgcaggaaaaagaaaagaaattgtcTCCTTCTTTACTCATAGCAAAtgtatcgttgacgtcacccattgtcgTTCATATGCCAACcaaagcctcattggctgttgaaacaaagagTCTTCTCTTCTTGTGGTTGGAACATTTGACTGACAAAAACAGTACTTGTACACAGatatctctcattagctccttttttttttcgtccaccagcaaagTGTACATTACATCGTTGTTATCTCTGTCAGTTGAGATTGGCTGCAAATCATCCATGATGGTTTGCATCttacgtcacggcagccatgttgctgTACAGAACAGTGCATTAAAATgtcctttgggaa

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O15381	Nuclear valosin-containing protein-like OS=Homo sapiens OX=9606 GN=NVL PE=1 SV=1
Q9DBY8	Nuclear valosin-containing protein-like OS=Mus musculus OX=10090 GN=Nvl PE=1 SV=1
Q9NAG4	Protein mac-1 OS=Caenorhabditis elegans OX=6239 GN=mac-1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000746 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16725 all species →	Nucleolin_bd	Nucleolin binding domain	Domain	Interproscan
PF17862 all species →	AAA_lid_3	AAA+ lid domain	Domain	Interproscan
PF00004 all species →	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR031996 all species →	Domain	NVL2, nucleolin binding domain	Interproscan
IPR041569 all species →	Domain	AAA ATPase, AAA+ lid domain	Interproscan
IPR050168 all species →	Family	AAA ATPase domain-containing protein	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR003960 all species →	Conserved_site	ATPase, AAA-type, conserved site	Interproscan
IPR003959 all species →	Domain	ATPase, AAA-type, core	Interproscan
IPR038100 all species →	Homologous_superfamily	NVL2, N-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23077 all species →	AAA-FAMILY ATPASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0042254 all species →	Biological Process	ribosome biogenesis	Interproscan
GO:0051973 all species →	Biological Process	obsolete positive regulation of telomerase activity	Interproscan
GO:1990275 all species →	Molecular Function	preribosome binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14571	RIX7, NVL; ribosome biogenesis ATPase	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.