Gene detail

Detailed information of XP_068731472.1 in Montipora capricornis

Genomic Location: chr12:40744546...40772116
NR annotation: XP_029189342.1, glycogen phosphorylase-like [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC138027769

ATGGGGGAGAAACCGCTTTCAGATGTGGATAGAAAGCGACAAATCTCTCTTCGAAAGCTCCCTGTGTTGGAGGACCTGAACAGCATTAAAGAATCCTTTAATCGCCATTTGCACTTTTCACTGGTAAAAGATCGCAATGTTGCCACGAAGCGAGATTATTACAACTCTCTGGCCTACACAGTGAAAGATCACTTAGTCGGAAAGTGGATTCGATCACAACAGTCATATTATGAAAAGGATCCAAAGCGCGTCTACTATCTTTCATTGGAGTACTACATGGGTCGTGCCTTAACTAATACCATGATCAATCTAGGGATTCAGGGAGAGTGTGATGAGGCGATGTATCAGATTGGTCTGGATATGGAAGAGCTGGAAGAAGTTGAAGAAGATGCTGGTCTTGGAAATGGAGGCCTTGGAAGATTGGCCGCTTGTTTCCTTGATTCACTGGCTACTCTGGGTTACCCGGCATATGGTTATGGCATCAGATATGAATATGGAATCTTCAAACAGGCTATTGATAGCCGAGGAAGTCAGATTGAGTTGCCTGATGACTGGCTTAAATTTGGAAACCCTTGGGAGAAAGCCAGACCAGAGTACATGATACCTGTTGAGTTTTATGGCAGAGTGGAGTCAGATGCCAGTGGGAAGAACCACCGCTGGGTGGATACCAGCATTGTTTTTGCTATGCCATATGACCAGCCCATCCCTGGATATGGCAACAACACTTGTAACACCATGAGACTGTGGGCTGCAAAGTCTCCCAAGGGCTTTGATCTTTCTTACTTTAATGATGGAGATTACATCAAGGCAGTCCTTGACAGGAATTTGGCAGAGAATATTTCAAGAGTTTTGTACCCAAATGACAATTTTTTTGAAGGAAAAGAGTTGCGCTTAAAGCAACAGTACTTCATGGTGTCAGCCACTCTTACAGACATTGTAAGAAGGTATAAAGCCCCAAAGTTTGGTTCCAAAGAGGCTGTAAGGATGTCATTTGATGATTTTCCAGAAAAGGTTGCCATTCAACTGAATGATACTCATCCATCACTGGCTATACCAGAGCTGATGAGAGTATTCTTAGACAAAGAGAAACTTCCTTGGGACAAGGCCTGGGACATTTGTGTTCAAACCTTCAGTTACACCAATCATACTGTCCTTCCTGAAGCTTTAGAGAGATGGCCAGTGCACATGCTGGAGTATATTCTACCAAGACACCTTCAGATTATCTATGAAATAAATTCCTTATTCCTGAAGAGAGTGGAAAAATTGTGGCCTGGAGACGTAGAAAGGATGCGACGGATGTCATTGGTTGAGGAAGGCCATGAAAAACGCATCAATATGTCACACTTGTGCATTGTAGGCTCTCACACAATCAATGGTGTGGCAGCTCTGCACTCAGAACTTCTAAAAACAACTGTGTTCAAAGACTTCTATGAAATGTTCCCTGAGAAATTTCAGAATAAGACAAATGGTGTGACACCTCGACGCTGGCTTCTTTTGTGCAATGCTGGATTATCAGACCTCATCTGTGAGAAAATTGGTGAAGAATGGATAACAGACTTGTCAAAATTGAGAAAGTTGGAGCGGTATGTGAAAGACCGGAATTTTAGACATGCATTCATGAGGAAGAAACAGGAAAACAAGATTAGACTTGCAGCTTTCATAAAGGCAGAGTTTGAAATTGAAATCAATGTAAACTCTATTTTTGACGTTCAAGTGAAGCGGATCCATGAATACAAACGGCAACTGATGAACTGTCTTCATGTCATTGTGCTGTACAACAGACTCAAGGCTGACCCAAACATGGATTTTGTTCCTCGCACTGTCATGATTGGAGGAAAGGCAGCTCCTGGGTACTACATGGCAAAACTGATCATTAAACTCTTCAACAACATTGCAAGAGTTGTGAACAATGACCCCATCATTGGAGACAAGCTGAAGCTTGTGTTTCTTGACAACTACAGGGTTTCTCTCGCAGAGAAGGTGATACCAGCCGCTGATTTGTCTGAACAGATCTCCTTGGCAGGAACAGAAGCTTCTGGAACAGGAAATATGAAATTTATGATGAATGGAGCACTCACGATCGGTACCCTGGATGGAGCTAACGTAGAAATGAGAGAAGAGATGGGAAAAGAAAATATCTTTATTTTTGGAATGACAGTGGAAGAAGTGAATGCTCTCAGGGCAAAAGGCTACAACTCAATGGATTACTATGATAACAGCATGGAGCTCAGAAAAGCCATCAATCAAATCAGAGACAATTTCTTCTCACCCACTGAACCTGGCGCTTTTCAAGACATCGTCAATTCCTTGCTTCACCATGATAGGTTTCTTCTCATGGCTGACTTTGATGCTTACCTCAAATGCCAGGAACGAGTCAGTGAAGCGTACCAGGATCCCGATCAATGGTACAGTATGGCTATCTTGAATGTGGCTTCGTCTGGCAAATTTTCCAGCGATAGGACCATCAAACAGTACGCCGAAGAAATTTGGAAAGTAAAACCCATCAATGTTCGTGACGTCAAACCAGTCGGCATGAATTGA

Transcript

rna-XM_068875371.1

GTGAGGAGCGCCTTGTTTGCAGAACACTCAGAGAGCAGCCGGGTCGAAGGAGGGAGGGTTCTGGTGAGCAGTTGTCAGGTTTTCCCGTCTTTTTCTCGTGAATCATGGGGGAGAAACCGCTTTCAGATGTGGATAGAAAgcgacaaatctctcttcgaaagcTCCCTGTGTTGGAGGACCTGAACAGCATTAAAGAATCCTTTAATCGCCATTTGCACTTTTCACTGGTAAAAGATCGCAATGTTGCCACGAAGCGAGATTATTACAACTCTCTGGCCTACACAGTGAAAGATCACTTAGTCGGAAAGTGGATTCGATCACAACAGTCATATTATGAAAAGGATCCAAAGCGCGTCTACTATCTTTCATTGGAGTACTACATGGGTCGTGCCTTAACTAATACCATGATCAATCTAGGGATTCAGGGAGAGTGTGATGAGGCGATGTATCAGATTGGTCTGGATATGGAAGAGCTGGAAGAAGTTGAAGAAGATGCTGGTCTTGGAAATGGAGGCCTTGGAAGATTGGCCGCTTGTTTCCTTGATTCACTGGCTACTCTGGGTTACCCGGCATATGGTTATGGCATCAGATATGAATATGGAATCTTCAAACAGGCTATTGATAGCCGAGGAAGTCAGATTGAGTTGCCTGATGACTGGCTTAAATTTGGAAACCCTTGGGAGAAAGCCAGACCAGAGTACATGATACCTGTTGAGTTTTATGGCAGAGTGGAGTCAGATGCCAGTGGGAAGAACCACCGCTGGGTGGATACcagcattgtttttgctatgCCATATGACCAGCCCATCCCTGGATATGGCAACAACACTTGTAACACCATGAGACTGTGGGCTGCAAAGTCTCCCAAGGGCTTTGATCTTTCTTACTTTAATGATGGAGATTACATCAAGGCAGTCCTTGACAGGAATTTGGCAGAGAATATTTCAAGAGTTTTGTACCCAAATGACAATTTTTttgaaggaaaagagttgcGCTTAAAGCAACAGTACTTCATGGTGTCAGCCACTCTTACAGACATTGTAAGAAGGTATAAAGCCCCAAAGTTTGGTTCCAAAGAGGCTGTAAGGATGTCATTTGATGATTTTCCAGAAAAGGTTGCCATTCAACTGAATGATACTCATCCATCACTGGCTATACCAGAGCTGATGAGAGTATTCTTAGACAAAGAGAAACTTCCTTGGGACAAGGCCTGGGACATTTGTGTTCAAACCTTCAGTTACACCAATCATACTGTCCTTCCTGAAGCTTTAGAGAGATGGCCAGTGCACATGCTGGAGTATATTCTACCAAGACACCTTCAGATTATCTATGAAATAAATTCCTTATTCCTGAAGAGAGTGGAAAAATTGTGGCCTGGAGACGTAGAAAGGATGCGACGGATGTCATTGGTTGAGGAAGGCCATGAAAAACGCATCAATATGTCACACTTGTGCATTGTAGGCTCTCACACAATCAATGGTGTGGCAGCTCTGCACTCAGAACTTCTAAAAACAACTGTGTTCAAAGACTTCTATGAAATGTTCCCTGAGAAATTTCAGAATAAGACAAATGGTGTGACACCTCGACGCTGGCTTCTTTTGTGCAATGCTGGATTATCAGACCTCATCTGTGAgAAAATTGGTGAAGAATGGATAACAGACTTGTCAAAATTGAGAAAGTTGGAGCGGTATGTGAAAGACCGGAATTTTAGACATGCATTCATGAGGAAGAAACAGGAAAACAAGATTAGACTTGCAGCTTTCATAAAGGCAGAGTTTGAAATTGAAATCAATGTAAACTCTATTTTTGACGTTCAAGTGAAGCGGATCCATGAATACAAACGGCAACTGATGAACTGTCTTCATGTCATTGTGCTGTACAACAGACTCAAGGCTGACCCAAACATGGATTTTGTTCCTCGCACTGTCATGATTGGAGGAAAGGCAGCTCCTGGGTACTACATGGCAAAACTGATCATTAAACTCTTCAACAACATTGCAAGAGTTGTGAACAATGACCCCATCATTGGAGACAAGCTGAAGCTTGTGTTTCTTGACAACTACAGGGTTTCTCTCGCAGAGAAGGTGATACCAGCCGCTGATTTGTCTGAACAGATCTCCTTGGCAGGAACAGAAGCTTCTGGAACAGGAAATATGAAATTTATGATGAATGGAGCACTCACGATCGGTACCCTGGATGGAGCTAACGTAGAAATGAGAGAAGAGATGGGAaaagaaaatatctttatttttgGAATGACAGTGGAAGAAGTGAATGCTCTCAGGGCAAAAGGCTACAACTCAATGGATTACTATGATAACAGCATGGAGCTCAGAAAAGCCATCAATCAAATCAGAGACAATTTCTTCTCACCCACTGAACCTGGCGCTTTTCAAGACATCGTCAATTCCTTGCTTCACCATGATAGGTTTCTTCTCATGGCTGACTTTGATGCTTACCTCAAATGCCAGGAACGAGTCAGTGAAGCGTACCAGgATCCCGATCAATGGTACAGTATGGCTATCTTGAATGTGGCTTCGTCTGGCAAATTTTCCAGCGATAGGACCATCAAACAGTACGCCGAAGAAATTTGGAAAGTAAAACCCATCAATGTTCGTGACGTCAAACCAGTCGGCATGAATTGAACAGACAGGGTTGTCTCTATGCTGTGCTTGGAGTTGTCTGCACAGGCAGGGCATTCTCTTGATTCCAGGCGGCGGAATGAAAATTTGAAGTGTTCAGTTAGGTATACTGTGACTTAAACAAGTGAATTCAAGTTCTTTGCGTTACATTTTAGGAAGTTGTTGAATCTATGTGATTTGCACGTGTATTAGTTTTTTAGATTAATGCTGCAATGAAACTGTTTCAAAGTTTGAAACTGACACTTAATTATTCTAGGGTAGTTTATTGTAACGTCTAAGCCGTTTAATGTAGCGTTGTGTAAACTTTGGGACTATTGCCAAATAGAAATGCACGAATCTTGTTTTTACTAGACGTCTTCTTGGTGGGGCGATAATTAAGTCTCCTTGCACGGTGTGGCAATCTCCTTATTCTGCACCGTAATTACAGGTCTTTTTGGCTAAAAAGCCACAGTGAAGGCCTCCAACTGATTGAGCGTCTCAGTCAAGTGATTCAATTAATAATGATTTGAACAAGGGAGAGTTGATAGTAATCCTTTAAAAGGCTCGAAAGCGAGATAGTCTAATATGGATTGTCAGCGTACGAGGCATTAACAGTGCAACTTTCGAAACCGTTTATGGTTGCTCATCGCGTTCCTAGGCTCAGTGTCTCTATTTAAATAAGATTTGCTGGTGATAACACGACGGTGTTTACCTTGATTTCTAATGTCATAAGCTTTAATGGTAAAGGATGATTATTTTGATTGATGTAATAAAAAGCTATTTGAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P79334	Glycogen phosphorylase, muscle form OS=Bos taurus OX=9913 GN=PYGM PE=1 SV=3
Q9XTL9	Glycogen phosphorylase OS=Drosophila melanogaster OX=7227 GN=Glyp PE=2 SV=2
P00489	Glycogen phosphorylase, muscle form OS=Oryctolagus cuniculus OX=9986 GN=PYGM PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004546 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00343 all species →	Phosphorylase	Carbohydrate phosphorylase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000811 all species →	Family	Glycosyl transferase, family 35	Interproscan
IPR011833 all species →	Family	Glycogen/starch/alpha-glucan phosphorylase	Interproscan
IPR035090 all species →	Conserved_site	Phosphorylase pyridoxal-phosphate attachment site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11468 all species →	GLYCOGEN PHOSPHORYLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0005980 all species →	Biological Process	glycogen catabolic process	Interproscan
GO:0008184 all species →	Molecular Function	glycogen phosphorylase activity	Interproscan
GO:0030170 all species →	Molecular Function	pyridoxal phosphate binding	Interproscan
GO:0004645 all species →	Molecular Function	1,4-alpha-oligoglucan phosphorylase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00688	PYG, glgP; glycogen phosphorylase	EC:2.4.1.1	Insulin resistance	ko04931	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068731472.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

30TPM > 0

1Conditions

198.9Max TPM

100.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	30	100.06	198.89

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	198.89
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	196.57
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	187.76
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	166.28
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	163.68
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	154.09
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	151.27
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	150.89
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	148.51
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	144.16
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	137.36
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	135.41
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	130.36
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	123.75
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	123.24
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	121.67
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	116.34
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	111.71
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	91.62
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	90.00
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	89.50
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	87.65
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	86.50
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	86.36
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	84.18
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	82.82
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	81.16
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	55.28
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	53.15
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	51.99
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.