Gene detail

Detailed information of XP_068731528.1 in Montipora capricornis

Genomic Location: chr12:6329699...6335156
NR annotation: XP_029203080.1, glycine N-methyltransferase-like [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P13255	Glycine N-methyltransferase OS=Rattus norvegicus OX=10116 GN=Gnmt PE=1 SV=2
Q9QXF8	Glycine N-methyltransferase OS=Mus musculus OX=10090 GN=Gnmt PE=1 SV=3
Q29555	Glycine N-methyltransferase OS=Sus scrofa OX=9823 GN=GNMT PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004229 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13847 all species →	Methyltransf_31	Methyltransferase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR014369 all species →	Family	Glycine/Sarcosine N-methyltransferase	Interproscan
IPR025714 all species →	Domain	Methyltransferase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16458 all species →	GLYCINE N-METHYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006111 all species →	Biological Process	regulation of gluconeogenesis	Interproscan
GO:0006730 all species →	Biological Process	one-carbon metabolic process	Interproscan
GO:0016594 all species →	Molecular Function	glycine binding	Interproscan
GO:0017174 all species →	Molecular Function	glycine N-methyltransferase activity	Interproscan
GO:0042802 all species →	Molecular Function	identical protein binding	Interproscan
GO:0046498 all species →	Biological Process	S-adenosylhomocysteine metabolic process	Interproscan
GO:0046500 all species →	Biological Process	S-adenosylmethionine metabolic process	Interproscan
GO:0051289 all species →	Biological Process	protein homotetramerization	Interproscan
GO:1901052 all species →	Biological Process	sarcosine metabolic process	Interproscan
GO:1904047 all species →	Molecular Function	S-adenosyl-L-methionine binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00552	GNMT; glycine N-methyltransferase	EC:2.1.1.20	Cysteine and methionine metabolism	ko00270	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068731528.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

28TPM > 0

1Conditions

50.8Max TPM

20.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	28	20.46	50.85

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	50.85
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	50.27
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	48.97
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	48.33
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	41.75
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	40.71
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	34.48
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	30.09
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	29.92
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	29.37
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	28.92
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	28.54
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	27.34
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	25.17
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	24.48
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	21.49
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	21.43
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	21.04
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	20.15
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	15.52
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	14.65
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	14.30
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	13.78
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	13.47
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	12.65
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	11.23
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	9.17
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	8.45
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.