Gene detail

Detailed information of XP_068731574.1 in Montipora capricornis

Genomic Location: chr12:5793226...5808278
NR annotation: XP_044163141.1, glutaminyl-peptide cyclotransferase-like [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_068875473.1

ATCGAAAACGCAACCCGAGTATTTTTGCAGCATCGATATCGAATATTTGACTGATGAAAGTAAAAATCTCGAGATAAGTAGGGCCGCGATTGATAAACACAAATTTCAATTTCCGTTGATCTTCGCAAGAGGAGGTCAAAGCACGTCAgtacaaaattattttcttaatcataAGCTGATTAGCTTGATCTTCAACGAACCCACAAGCCTTCGTTGTCGACCGTTGGAAGAAGGATGAAGCTGACAGTGGTCTTAATTCTCGTCTTCTTTGAGATTGTTTCGCTGCGTCGAACGGACACTAAAAGGCTTTCTGATCACCCGTTGAAAAGAACGCTAGCAGAATCCAAACTTAACGACTTGGCCCAAAGAACGGATTATCAGTCCTTTTACTATGATATTTTTCGTCCGATTTTACGCGTTCGTGTACCTGGAACAAATGGACATCACAAGGTCAAAATGTTTATAAAGAAAAACTTTGAAGATCTAGACTGGACAGTTTCCCTTGATGAGTTTGATGATAATACACCTTATGGGCCAAAGCGATTCACTAACATCATTGCCACACTCAATCCCAATGCCAAACGGAGACTTATCTtagctgcacactacgattccaaATACTTTCCAGAAAATAGCAACGGGTACTTTCTTGGTGCTACAGACTCTGCAATGCCGTGTGCAATGTTGATTGAAATTGCCAAGGTAGTGACACCATTATTTGCAGCGAGGAAGCAGCAGCTGCAAATGAACAGGAAAAATGGTGCttttgatgatgacgacaatgatgatgatgagCAGTCAGATGTGACATTACAAATGGTGTTCTTTGATGGAGAGGAGGCATTTGTTGAGTGGACAAGCACTGACTCTCTTTATGGATCAAGACATCTTGCAGACATATGGTACAACCAAAGTCACCCACCAGGCTCCACAAACAGTACAATGCTTAGTACCATAAATGCCATGGTACTTTTGGATCTTATTGGTTCACAAGGTGTTTcattttttaacactttcaatgaGACAAATGATTTATTTGAAAGACTGGAAGTCATAGAACGACGTTTAATGAGCACCAATCATATTGAGGACAGAACCCACACAAGGCCATATTTTGTTCATGGTTTAATGAATGGAGCATTCAGGGTGGAAGATGATCATATACCATTTTATgaaaaagGTGTCAAAATTCTCCATCTGATTTCTTTGCCCTTTCCCTCTTGTTGGCACAAGCCTTGCGATGATGAACCAGCTATTAGCGGAAGGGTTGTAAAAGACTTGCTGAAGATATTACAAGTTTTTGTTGTAGAGTACTTTGCTCTGACAGTAGAGTAATTTATTCACATAACATTCTTtgcttgcactcacgtgataagacggccatgatggtgccaaaacaatagaaaaatgtagtttaagttTTGCATAATGATAAAGTCAAATCCCCAAAAGACTtcgctatttttctttccaccaacatggctgccgtgacatcacttgcaatcaaagaataggccagtttcgtattctaacggttggactggatctagcatgaaatggaggctaatgcgggaaaattaatttgcatttgaaaagatttgcctgcattagcctccatttcatgctagatccagtccagccgtgagaattcgaaaatggtctattgataAGATTGTGCTTGTTCTCCAAAAATTAATtactattttctattttttatcttttattccattttacatttaaaaagtattttatcTAAGGCATGCTTTTAACAAGCAGAGACAAACAACGAAGAATTATTTTAGAACTTAACAATTCAGGTTGGCAAAGTAAGGGTTTGTGTTCGAGTTTCTCAACCAGCTTCAAACCAGGTTGAACAAGTGAAACAAGTAAAGCATCATGAACATTAAATGCCATCTTTTTCGTTGGAGATTGTAAAGTgaggcgggtctaaaacacaggtaaCATTCCACACGTCAGGACTACAAGTCCCAGCTCCACTGACGAACAGCTAAGCCAAGAGTTTCCCCAAggcctgaaacaacatttttgtacaGTGATTAGGGCtaggagacacttttggtgttgtttatttatctgcagcacagtgacatgtacactgACCTGTGTTTTATACCCCACCTTGTTTTATGAGGCATCTGGGCAACCTCGGACCTAAGCGCTGCAATACAgattgtacttgtacatattcattgccttGAATTTGACAGCTTCAATTCCCACAATTTGCTCCCGTCTTTCCTTGTAGcgcagtcggtagagcagcggcgatctaacccgaaggtcgtgggttcaattcccaccctggtcagaggttTTCTCTGTCGTAATGTGGGCCCAAttctattagtagggctaacgctcacatggtttacatgggtagaaaacagcCCTTCACATGATCgtacaatagttaattctgtacGTCGAAATCAgtataaagtgctacacggccaacgttttcaaaaacgtaacccttccagATAAAAGAGAGCCTGGGTTCGTGATTgataaaattgtttttcttattGCCACAAAAGGAAAATGTAAGTGGTCGAATTTGGTGATCTTAAAAGAGTCACACATCCTCTGATGCAAACACCTGTTGCGAGTAAATTGAAAGAAAGTCAGTCTAAACAAATTAGCCGTAATTGGATGATAGCGGGGGTTACTTGGGTAGCACGTCACTTTTCCATGCTGCTATATAGATAAATTTAATTGTCTAAGATATTGCAATGTTATGAGTTAATATATCGCCaaatttttgctatttttaatattattgctcTGCATTCATGCTGGGCAACTGAagacaatagacctaatcggctaactcaatgttgtacccaattcagatctcccgggattaagattctttgtatatagtatttgcatgataatgtaggattcatatttaaagtgcccctgtgaccaaaaaatcaattcatatttttctttggatttcaaaactatgttaacaaaacactaagtgacccacgttttaagccttgatttcaaaaagacacctctttattttaactgtaattttcctatttaatggtccgccattactaacattatgttcttgagagagctggatcgaggagaaaatgacgtcaaaggctcactagtttaagaatgcacagcgtgtgtacgccgcagaattaatatgcagcgcggaggttttgggctttcagacttttaaactcacgctttgcatatataataagctgcgttcacacgctgaaattttaagctagtgagcctctgacgtcacttttccctggatccaaccgtctgaggtccaatcggtcagttttgaacgtgagtaatggcggaccgtaaaatccaaaacttacactcaaagtaaacggcctttggataaaaatcaaagctcaaaattttgccagtcacgtgttaagcaaacacactttcaaaatctgaaggaaaaaaggaagtggctTTTTTGATcaaaggggcactttaaatgccatggaaatacctggaacaaaacgttttattcccaaagggtttgaattgggttcaacattgagttagccgattaggtctattcaggatcaaataaatgaaaaagaatattttggttttgttttacgTATTGCATTTTGTAACAATTGAAtaaagggcgctttccttttgtcagaactggcctgCCAGATCCAtcagtttgcaaggaaaatgcaacaatttgaaggaacacttgcatgataaacCCACGCATTTTTCTGGAGGAGTGTACATTATCCTCAAACTGTGATAATTTGAAGACGTTGTAgggttagtccttccaaatgctcGATCTGGTTGATCAGTTATGTCATGGAAAGCACTTTAAGACGAAAAGGTCTGAGGTACATGCAGTTTTTGCTCCACAAATCTTATCTTTTTGGACACTTACGAGAGGTTAATTAAGTTCTATCTGTGTCGATGTTTCTATCCGCCCGGCTTGCGTACCTGATCAACTCGCAGCCGTTTGCTACTTCATAAATTCATCTCAAATAGTCAAACCATTGATTCGAATGGAAATTTAAGGCTTAAAATGCCAATGTATAAGCTATTGTCGAacaaaaattatgtaaaaaatgtaaaattatgaTCTATAGTGCAGAATTATAAAATAAAGGAGATGAGCGACTGCAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9CYK2	Glutaminyl-peptide cyclotransferase OS=Mus musculus OX=10090 GN=Qpct PE=1 SV=2
Q28120	Glutaminyl-peptide cyclotransferase OS=Bos taurus OX=9913 GN=QPCT PE=1 SV=1
Q16769	Glutaminyl-peptide cyclotransferase OS=Homo sapiens OX=9606 GN=QPCT PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006015 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04389 all species →	Peptidase_M28	Peptidase family M28	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007484 all species →	Domain	Peptidase M28	Interproscan
IPR040234 all species →	Family	Glutaminyl-peptide cyclotransferase-like	Interproscan
IPR037457 all species →	Domain	M28 Zn-Peptidase Glutaminyl Cyclase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12283 all species →	GLUTAMINYL-PEPTIDE CYCLOTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0016603 all species →	Molecular Function	glutaminyl-peptide cyclotransferase activity	Interproscan
GO:0017186 all species →	Biological Process	peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00683	QPCT; glutaminyl-peptide cyclotransferase	EC:2.3.2.5	Peptidases and inhibitors	ko01002	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068731574.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

30TPM > 0

1Conditions

129.4Max TPM

55.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	30	54.96	129.38

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	129.38
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	128.12
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	126.91
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	87.06
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	85.90
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	83.79
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	81.22
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	80.76
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	77.02
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	67.06
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	64.54
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	63.61
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	63.43
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	57.63
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	54.39
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	52.04
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	51.73
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	51.61
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	51.52
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	51.03
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	50.56
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	50.35
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	49.82
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	48.66
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	47.36
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	46.40
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	45.38
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	45.25
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	44.40
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	41.58
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.