Gene detail

Detailed information of XP_068731576.1 in Montipora capricornis

Genomic Location: chr12:14791733...14800702
NR annotation: XP_044163176.1, 2-aminoethylphosphonate--pyruvate transaminase-like [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_068875475.1

ACGGGAAACGTGCAAGTTATCATGTGAGGTCTCCGAGGAACTCACGCACTCGACTCTTGAATTCGTAGAAAACCTTCTTCTGTGTTAATATTGTATGAATTTATCCTTTTGTTTGTTTACCGACAAAATGGTAGCGATGGCTTTCCGTTGTGGGATTACTAGGTCATTGTCTTTCGTCGCTCGGAATTGTAAAAAGCCATCACAAGCGATTTATGGTTATCCCAGATGCAGATCGCTTTGTGTGGCTGCAGGCCGTTCAAGTCTGGATGAACCAGATTTTGAATCTGGACTCCACAAGGACAAGAAGCTGTTTACTCCAGGACCACTGGGAGTTAGCTTTGAAACGAAACGGGCGATGCTTAGAGACCTTGGTTCACGTGACGCTGAATTCATTGGCATTGTCAAAACTATTCGGTCAAGACTCTTGGGAATTGCTGGTGTTTCTCCTGAAGAGTACACTGCCATACTGGTTCAGGGCAGTGGAACCTATGCTATAGAGGCAGTGTTGACTACAACAACTCCAAGGCAAGGTGGAAAAGTGTTCATCATTGAGAATGGCTCTTACGGTAAAAGAATGGTCAAAATCTGTGAAGTTGCTGGTATTGAAACGGTTGTTCTTCATGGAGAAGAGAACTCAAAAGCTGACTTGGCAAAAGTTGAAGAAATCCTAAAAAGTGACAAATCCATTAGTAATGTTGCCATGGTTCACTGTGAAACATCAACAGGTGTTTTTCATCCAGTTGAAGCTGTAGGAAAGCTCGTCAGAGAGCATGCTCCTAGGGCATCTTATTTTGTAGATGCCATGAGCAGCTTTGGAGCTGTTCCACTCAATTTAGATTTGGCAAACATTGATTTCATGGTGAGTTCCGCCAACAAGTGTATAGAAGGTGTTCCAGGATTCTCATTTGTTATTGGCAATATTGAGTCCCTGAAGCGATGCAAAGGTTGGGCTCGTAGTCTCTGTCTTGACATTGTGGATCAGTATGAAGGGCTGGAACAAAATGGCCAATTTCGTTTCACCCCAGCCACCCATGCTATGCTGGCATTTCGCAAAGCTCTGTCAGTATTTAAAGCAGAAGGTGGAGTTGATGGAAGAGCAAACAGgtACATGGAAAACTGTGATGTCCTTCAATCAGGTATGCGAAAGCTTGGTTTCAAGAAATTCTTAGATGATACCCATGAAGGTTACATCATTACCTCCTACTACAATCCCAAGCATCCCAATTACAACTTTGAGGAATTTTACAATCGACTGAACAGCAAAAACCAAGTGATCTATCCTGGGAAAGTTAGCAGTGCTGATTGTTTTAGGATTGGAAACATTGGAAGGTTGTATCCTGAAGATATGCAGCACTTACTTGAATGTATCAAAGTAGTTTTGGCTGAAATGGATATTCCAGTGCCGTTAGAAGATGACTGATCCTATTAATTTAAGTGGCCATAAAATAAGTACAGAAAGTAAGGAAATGATGTGAATGCAAGACCATTCTGTGATTTCTGGACACGAGTGGTGTTTCAAAAGATCTCAagatttgagaactttcaaaacatcacgagcgACCACGAATCATGAAATACACCTGTAGATGAGCAAGTTcgtacaattttaaatttattatatgtACTCAACAAAATTGCTTCATCGTTGTTTCCATAGCACATAAGTTCGTATTGCACACTATAACCTAATTATGCATTTgtcattaaccaatcagaatcacAATATTCTGTCAAGTATAAATTATGATAAATGtggataattattattttcattaataCGGAAGGGCAGGTGTAGGGTATTTTCATAAAACAAGTCAGCAAGACTTGGCAAGCAAATAAGTTGCTGAAGGCTTGTGAAAATGATCATCCTACCAAAGCACCTTCCGTGAGAATGTTTTAATATTGCATACAAGTTACACACTAGTACTGTGAATACTGAGGCGGTCCCTGATTACCCACAATTCAGTGTTTGAATTAGCTAAATTACATTAATTAGGTAACCTGTGACACTATGAAGACTGTACACAGTGGttgtcaaaattaatattgatcCTTATTGGTGAAATTTTGTATCTGAATTTCTAATGTCAGTAAAATTAGTCGCTTAGTTGAATAGTCTGTGTCCTGTGAGTGTGGTCAttgtattttgaattttgtgATAAGCACACTTTCTAGTTATTGACAGCAGTAGATACCCTGCAGTTGTTTGTTGCTAGCACTTTTCCTTCATCAAaggtcattttgttttgatcaaagtttttttcttgttggaGTGGTGTAGTTTGCATTAGAAGCAGTTGAGGTCAGAAACAGGAAAAAATTGAAACTGCAAGAATTGTAACAATACAGAACAGGGAATTTAGAGGAGAACTTGAGGGAAATGGAGATTCCAATAATGCAGTGAAGAGTATAACAGCAGTTCTGCACCTTTGACTCCATATTTGGGCCTAAATAGTGCAAAACTAACAGCATTTCAAGTTGGTAAAGCAGGAGAAAAAGTTGATGCTTGCATCAGGGCACCCGTGTTACTGATAGAAAAACTGGCTGAATACTTTTCTAATGGTCACTTCTTTGTTGCAGTGTAATATCATTAGGGCTGGGAGGCACCAATTagcttgtttatttattaacaCGTCTGACCTGACCTTTGACCATACCTGTACTTGAAATCCAACCAAATCTCCAATAATTTAGGAGCAAATTGTATGATTTTACTACAAAGTAGATGGTGTAATATATTATTAAGTGTATGTAAAATTTTGAACACAATAAAATTTTGAAAGTCCACCAAAGAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A6TFW2	2-aminoethylphosphonate--pyruvate transaminase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) OX=272620 GN=phnW PE=3 SV=1
P96060	2-aminoethylphosphonate--pyruvate transaminase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=phnW PE=1 SV=1
B5EXH1	2-aminoethylphosphonate--pyruvate transaminase OS=Salmonella agona (strain SL483) OX=454166 GN=phnW PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003226 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00266 all species →	Aminotran_5	Aminotransferase class-V	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012703 all species →	Family	2-aminoethylphosphonate--pyruvate transaminase	Interproscan
IPR015421 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan
IPR015422 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan
IPR024169 all species →	Family	Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase	Interproscan
IPR015424 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan
IPR000192 all species →	Domain	Aminotransferase class V domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42778 all species →	2-AMINOETHYLPHOSPHONATE--PYRUVATE TRANSAMINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0019700 all species →	Biological Process	organic phosphonate catabolic process	Interproscan
GO:0047304 all species →	Molecular Function	2-aminoethylphosphonate-pyruvate transaminase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03430	phnW; 2-aminoethylphosphonate-pyruvate transaminase	EC:2.6.1.37	Amino acid related enzymes	ko01007	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068731576.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

31TPM > 0

1Conditions

234.8Max TPM

26.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	31	26.24	234.80

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	234.80
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	43.86
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	38.94
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	36.05
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	35.06
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	34.42
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	32.91
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	30.16
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	30.11
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	29.49
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	25.91
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	25.65
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	25.35
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	25.25
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	25.06
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	23.89
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	23.36
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	23.32
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	20.97
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	20.89
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	20.64
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	19.54
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	19.51
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	19.29
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	18.42
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	17.88
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	15.28
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	14.09
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	5.34
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	4.76
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	4.43
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.