Gene detail

Detailed information of XP_068731590.1 in Montipora capricornis

Genomic Location: chr12:14642198...14645507
NR annotation: XP_022792840.1, protein FRG1-like [Stylophora pistillata]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O73747	Protein FRG1 OS=Takifugu rubripes OX=31033 GN=frg1 PE=2 SV=1
P97376	Protein FRG1 OS=Mus musculus OX=10090 GN=Frg1 PE=1 SV=2
Q14331	Protein FRG1 OS=Homo sapiens OX=9606 GN=FRG1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008399 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06229 all species →	FRG1	FRG1-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010414 all species →	Family	Protein FRG1	Interproscan
IPR008999 all species →	Homologous_superfamily	Actin-crosslinking	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12928 all species →	FRG1 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan
GO:0055120 all species →	Cellular Component	striated muscle dense body	Interproscan
GO:0071013 all species →	Cellular Component	catalytic step 2 spliceosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13122	FRG1; protein FRG1	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068731590.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

30TPM > 0

1Conditions

182.6Max TPM

56.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	30	56.83	182.58

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	182.58
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	100.97
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	93.53
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	80.44
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	78.53
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	76.89
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	75.20
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	74.39
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	72.38
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	71.76
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	71.14
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	70.13
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	67.92
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	67.19
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	60.04
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	59.48
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	58.72
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	58.25
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	57.93
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	57.51
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	54.93
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	54.39
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	53.44
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	53.34
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	52.27
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	52.16
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	51.77
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	51.36
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	50.20
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	36.94
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.