Gene detail

Detailed information of XP_068732010.1 in Montipora capricornis

Genomic Location: chr13:10808111...10840940
NR annotation: KAJ7381402.1, Importin subunit alpha-3 [Desmophyllum pertusum]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_068875909.1

TGAACCAGGAGTTTTTTAGATGGCGGCGGACGCTCTAGACCGGTGATTTGCAGACTTTTCCGTTCCCTACGGCCTGCAAAAACACAAACATCAAGATAACGAATCAAAAAGAAATGTCCACAAAAAGTGCAGATTCGAGACAGAGGTTTTACAAAAACAAGGACAAGGATCTATCCGCACTGAGGCAACGAAGAAATGAAGTGACAGTTGAGCTCAGAAAGGCCAAAAGAGATGATTGcattcaaaagaaaaggaatgtTCCCCAGGATATTGCAGATGAAAAAGATGAGAGTTTACAGGGGAAAAGCCTCCATAGCATTGTTTTGAATGCAAGCAGTCACGATCCAACTGAACAGCTCTGTGCTGTACAAGCAGCGAGAAAACTTCTTTCCAAGGATCGTAATCCACCAATTGATGAACTTATTGAGTCTGGTATTTTGCCAGTACTTGTCAAGTGCCTAGAGAGAGAAGACAATCCATCCCTTCAGTTTGAAGCAGCATGGGCCTTAACAAATATTGCTTCCGGTACATCTGAACAAACTAAAGCCGTAGTCAAAGCTGATGCTGTGAAGTATTTTATGAAGTTGTTGGATTCACCACATCAAAATGTTTGTGAACAAGCTGTCTGGGCCCTTGGAAACATCATTGGTGATGGACCTGGCTTGAGAGATTTTGTCATTCAACATGGTGTAGTTAAACCTTTGCTCAAGTTTGTCAGTCCTAATGTCCCAATCACTTTTTTGAGGAATGTGACCTGGGTTATAGTAAATCTCTGTAGAAACAAAGACCCCCCTCCTCCGATGGACACCATTAAAGAGGTTCTTCCAGCATTGGCACTACTCATCCACCACCAAGATCTGAATattttagtTGATACAGTATGGGCCTTATCATACCTGACAGATGGGGGTAATCATCAAATACAGgttGTTATTGACAGTGGTGTAGTACCTTTTCTTGTTCCCCTTTTAAGTCatgctgaaattaaattacagACAGCAGCATTAAGAGCTGTTGGTAACATTGTCACTGGAACAGATGAACAGACGCAGGTTGTCTTAAACAATGGTGCCCTTAGTCACTTCCCAGCCTTATTAAATCATCacaaagaaaaagtgaaaaagGAAGCCGTTTGGTTTTTATCAAATATTACTGCTGGAAATCAGTCTCAAGTACAAGAAATCATCAATGTCGGACTGGTTCCGCTTATTATTCAGACTTTAGAAACGggTGAATTTTTAACACAGAAAGAAGCCGCATGGGCCATAAGCaacttcacagtcagtggcACACCTGCGCAGGTAGCAGTTCTTGTTGATTGCGGCGCTATTCCTCCATTTTGCAAGTTACTGGAATGCATGGATACTCAAGTCATTCAGATTGTTTTAGATGGCCTCAACAACATACTGAAGATGGCCGGTGACAAGGCAGATACAATCGCTACGGTCATTGAAGAAGCTGGAGGTTTGGATAAAATAGAATTTCTTCAACAGCACGAAAACGAGGAAATCTACAAACTGGCCTTTGGAATGATCGATCAATACTTCTCTAATGACGCTGACAACGGTGAAGAAGAGTTACTCCCTCAAGAGGTGGATGGACAGTTTGAATTCCAGGCTAAAGATAACCTCCCTCCTGGCGGCTTCAAGTTTTGAAGCTCAATTGCTATCGATAAAAACTTGACTAACCAAGTAGAGTAcaagcgagcgagcgagcgagcgaaaACACGAACGAACGAACGCTAGAGTGTGCGAGAACTAAACACAACAGCAAGAGGAGTGAGCGAGCAAGCAAGCGAGGGAGTGTTTCGCCGGTTTATTGTCCTATCCCGTCCCCACCCCCCTACCATCATTTGGCCAAAGCAACTTGGCTGTTAATTACGAGTGGTTTTAATTTTGTCGGAACTTGGTGAAAAAGAGTTGCGAGAAGAACTCCCCTAGCGACAGCCAATGTCCGGTTGGTATGTAGCACATTGCCGGCCCGCGGCATGGCTGTGATAAAGACATTCTCGGTGATACCAGAACCCACTGAAGAGGATTAAATGAAATCAGTTTGTACAAAGGTCTTAGCTGATACAATGAGTTTTATGAAGATCGAGTTGAATGTTATTTGCGTAATCTTGGGCTCAGAACACGGACTTATTGTTGTCTAATTGAGCCCGTAAGCAATGCAACAAGCGACGTCGAGGAGGATATTGTCCCAATCGTTTTAGAAATCGGAAGGAAATTTTCGTGCTTTTGTTTGTACTATTTACTACAAATAAGTCAGTAAGTGTCGTCTTTAGTATGCAgtcttatttttgtattttttccctGTTTTAGTTGTTATTTCCTCCGAACTCCTCtcgatttattttattttcttgcgTTCCGACagttattttgaaagtgtgcaAACTGTATCTAACTGTAAAGTCGCGAATTTTATCagtaaattttaaactttttccCGTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O35343	Importin subunit alpha-3 OS=Mus musculus OX=10090 GN=Kpna4 PE=1 SV=1
O35344	Importin subunit alpha-4 OS=Mus musculus OX=10090 GN=Kpna3 PE=1 SV=1
O00629	Importin subunit alpha-3 OS=Homo sapiens OX=9606 GN=KPNA4 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001150 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00514 all species →	Arm	Armadillo/beta-catenin-like repeat	Repeat	Interproscan
PF01749 all species →	IBB	Importin beta binding domain	Repeat	Interproscan
PF16186 all species →	Arm_3	Atypical Arm repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR024931 all species →	Family	Importin subunit alpha	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR000225 all species →	Repeat	Armadillo	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR036975 all species →	Homologous_superfamily	Importin-alpha, importin-beta-binding domain superfamily	Interproscan
IPR002652 all species →	Domain	Importin-alpha, importin-beta-binding domain	Interproscan
IPR032413 all species →	Repeat	Atypical Arm repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23316 all species →	IMPORTIN ALPHA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006606 all species →	Biological Process	protein import into nucleus	Interproscan
GO:0061608 all species →	Molecular Function	nuclear import signal receptor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006607 all species →	Biological Process	NLS-bearing protein import into nucleus	Interproscan
GO:0008139 all species →	Molecular Function	nuclear localization sequence binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_068732010.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068732010.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

29TPM > 0

1Conditions

65.9Max TPM

28.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	29	28.71	65.95

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	65.95
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	65.79
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	50.18
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	47.19
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	43.89
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	42.78
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	40.97
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	40.89
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	39.47
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	39.23
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	39.21
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	38.97
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	38.24
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	37.86
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	35.76
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	35.60
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	34.29
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	33.69
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	33.54
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	31.28
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	30.63
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	30.50
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	26.02
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	24.53
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	23.03
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	18.28
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	18.01
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	16.19
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	11.46
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.