Gene detail

Detailed information of XP_068732291.1 in Montipora capricornis

Genomic Location: chr13:43766521...43780542
NR annotation: XP_029204641.2, ribonuclease H2 subunit B-like [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5HZP1	Ribonuclease H2 subunit B OS=Xenopus laevis OX=8355 GN=rnaseh2b PE=2 SV=1
Q28GD9	Ribonuclease H2 subunit B OS=Xenopus tropicalis OX=8364 GN=rnaseh2b PE=2 SV=1
Q3ZBI3	Ribonuclease H2 subunit B OS=Bos taurus OX=9913 GN=RNASEH2B PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006895 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09468 all species →	RNase_H2-Ydr279	Ydr279p protein family (RNase H2 complex component) wHTH domain	Domain	Interproscan
PF17745 all species →	Ydr279_N	Ydr279p protein triple barrel domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR040456 all species →	Family	Ribonuclease H2 subunit B	Interproscan
IPR019024 all species →	Domain	Ribonuclease H2 subunit B, wHTH domain	Interproscan
IPR041195 all species →	Domain	Rnh202, triple barrel domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13383 all species →	RIBONUCLEASE H2 SUBUNIT B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0032299 all species →	Cellular Component	ribonuclease H2 complex	Interproscan
GO:0005654 all species →	Cellular Component	nucleoplasm	Interproscan
GO:0006401 all species →	Biological Process	RNA catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10744	RNASEH2B; ribonuclease H2 subunit B	-	DNA replication proteins	ko03032	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068732291.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

27TPM > 0

1Conditions

52.5Max TPM

23.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	27	23.17	52.51

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	52.51
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	52.45
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	50.39
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	45.36
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	44.87
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	42.99
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	38.61
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	36.33
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	35.93
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	35.16
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	33.53
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	32.50
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	32.00
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	30.22
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	29.79
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	29.68
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	25.47
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	24.38
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	24.27
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	24.21
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	22.05
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	22.00
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	17.30
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	14.97
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	14.60
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	11.69
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	10.72
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.