Gene detail

Detailed information of XP_068732297.1 in Montipora capricornis

Genomic Location: chr13:32989525...32991027
NR annotation: KAJ7324066.1, hypothetical protein OS493_030239 [Desmophyllum pertusum]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P30740	Leukocyte elastase inhibitor OS=Homo sapiens OX=9606 GN=SERPINB1 PE=1 SV=1
P05619	Leukocyte elastase inhibitor OS=Equus caballus OX=9796 GN=SERPINB1 PE=1 SV=3
Q1JPB0	Leukocyte elastase inhibitor OS=Bos taurus OX=9913 GN=SERPINB1 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000838 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00079 all species →	Serpin	Serpin (serine protease inhibitor)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR023796 all species →	Domain	Serpin domain	Interproscan
IPR042185 all species →	Homologous_superfamily	Serpin superfamily, domain 2	Interproscan
IPR042178 all species →	Homologous_superfamily	Serpin superfamily, domain 1	Interproscan
IPR036186 all species →	Homologous_superfamily	Serpin superfamily	Interproscan
IPR000215 all species →	Family	Serpin family	Interproscan
IPR023795 all species →	Conserved_site	Serpin, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11461 all species →	SERINE PROTEASE INHIBITOR, SERPIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004867 all species →	Molecular Function	serine-type endopeptidase inhibitor activity	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13963	SERPINB; serpin B	-	Peptidases and inhibitors	ko01002	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068732297.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

27TPM > 0

1Conditions

538.1Max TPM

96.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	27	96.84	538.05

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	538.05
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	516.04
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	509.79
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	313.72
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	304.02
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	286.73
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	210.55
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	194.42
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	191.16
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	75.79
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	71.94
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	71.29
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	26.66
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	26.26
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	20.76
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	16.57
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	15.48
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	12.93
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	12.38
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	12.20
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	11.98
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	11.73
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	7.97
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	7.36
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	7.33
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	7.03
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	5.94
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.