Gene detail

Detailed information of XP_068732644.1 in Montipora capricornis

Genomic Location: chr13:31927628...31942005
NR annotation: XP_044180457.1, protein O-mannosyl-transferase TMTC4-like [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC138028901

ATGGCATCCAGATACAGGGCAAATGGAGTCAAACTTCGGAAAAAAACTCCAAAGGATCTTCCGGCAGAGGAGCGCGAAATCACAACTTATTTGGACTTTGATGCGTGCGAAGGAGACTTAGACATAGGCAGTGATTTTCCTTTCCCTAACTTGTCTTTAAACGTCGCCTCTGTTGTTGTATGTTGTGTTTCCATCATTTGTTATTGGAACTCCTGCAAAGGGGAATTCGTGTTTGATGATTCTGAGGCCATTGTGAGCAATAAAGACTTGCGAGGTGAAACCCCGCTGGGAAAATTGTTCGTCCACGACTTCTGGGGAGCGAACTTATCTTCTAACGCAAGCCACAAAAGTTATCGTCCTCTTACAATTTTGACTTTTCGATTCAATTATTGGCTGGCAGGAGGAGTAAATCCTTGGAGCTTTCATGTTGTCAATGTCATACTCCATGCTTTGGTGTCAACATTGTCTTTGAATTTTTTTTCAGTGCTTGTCACTGACACCCACAAGCACCATAAAAACAATTTTTCCGCCCCCAAGGCCAGTTTGTTCAGCGCATTGCTTTTTGCAGTACATCCAGTTCACACAGAAAGTGTTGCAGGTTTGGTTGGAAGAGCAGATCTTTTGGGGGCGCTGTTTTTTATCCTCTCCTTTCTCTTTTACGCAAGATGTTGTATTGTTGATTGTGAAGAAGATTCATCTCCTAAGAAATTTTCTTGGAAATACCTTATGCTTAGCATGGCATTCTGTGGCATAGCTATGCTTTGTAAGGAACAAGGAATTACTGTCTTGGGAATATGCTCTGCCTATGATTTGATGGTGGTATGCAGAATTGATCCCCTCGTACTTATACAGACAAAGTTAATGTACATAAAAGAAAACAGAAATGGGAACACAAAAATGGAAAAAAATGAATCACATTTGTGGATTAAGGGTGTCATGTACAGACATGCAGTTTTATTTTTCACTGGAGTGATTCTTCTGCTTTGTCGCTGGCACATTATGGGCTCATCACCTCCAGTATTCCAAGTGGTGGATAATCCTGCTTCATTTGAGAAGTCTATTACTTTGAGGGTAATCAACTATAATTACCTGTATGCTATAAATGCCTGGCTTCTTATAGTACCCCAGTGGCTTTGTTTTGATTGGTCCATGGGCTGTGTACCATTAATCAAGTCATTCACTGATCTTCGTTTGCTCTGTGTCGCTGCTATGTGGGCTGTGCTGTTATTGCTTATCTCCTATTGTCTATTTGGCAAAAAATTGCACCTTAAGCGGATTCTGACCATGGGGCTGGCTCTGGTTATTGTTCCGTTCCTTCCTGCATCAAATCTTTTCTTCACAGTTGGTTTTGTGGTTGCTGAGAGGGTTTTATATCTTTCCAGTCTTGGTTCTTGTCTTATTGCAGTGCTTGGATTTGTGGTTCTGAGTAAGAAAAACTTTGCAGGACAGAAGGCATTAGGTGGTATGATGTGGCTTGTTTTAACCCTCTACATTGCTCGTACAATTCAGAGGTCAGGTGAATGGATTGATGAAGACACACTGTTTACTTCAGGGCTTTCAGTTTGTCCTTTGAATGCCAAGGTTCATTACAATGTTGGAAAAATTAGAGCTGAAAAAGGAGAGGTGGTAATTGGCGAAAAATTTTATCGAGAAGCAATCAGGTTGAACCCAACATATGACCAAGCTTTGAACAATTTGGGGAATCTAATAAAGGATGATGGAAGGAATGAAGAAGCTGAGGGTCTTTTAGAAAGAGCTGTGAAGATAAGGAACAATTTTGCTGCAGGCTGGATGAACTTGGGAACAGTCAAGGCAGCATTGCACAAGGAAGAGGAAGCCGAAAGATGCTACAGAAGAGCCATAGTACATCGTCCAATATATCCAGATGCATACTTTAACCTGGGAAATCTGTACATTGACCAACATAAAACTTCGGAAGCCATCGCAGCCTTCAAAACAGCTGTCAATTTAAAGAACGACCATGTGGGAGCCTGGATGAATCATGCATTACTCCTTGAAAAGTCAGGTAACAGAGAAGCAGCTATATCTGTCATAAGAGAAGCCAAGAATCACATTCCCAATGAGCCTTCAGTTTATTTCAACCTGGCTAACATGCTTGGTCAGAAGGATGAGTTTTTAGAGGCCGAGAAAAACTTCATTAAAGCTTTGGAGCTCAAACCCGATTCTGCAGAGTTTTATGGAAACCTGGGAGTGTTGTATCACAGATGGGGAAAGCACGATCAAGCCAGAAAATTCTATCAAAAGGCGCTGAGGCTGGACCCTCAAAACGAAAATGTTTTGCAAAATTTACAGAAACTCAAAAGAGCGATGCAAAAATTGTCCACTGGCAGATCAAAAGAAAAATAA

Transcript

rna-XM_068876543.1

TGTTTACAGGGTCGTCTACAGGTGTTTGGCGCTTGCAGGGTAAACAAGATTCGCGCTTTGATTCAAAAAAATGATTGAGTTAAACCCACTGCGTATAAGGTTAAAAATTGCCCGGAATTAGCTGAATGTGGAACGATCTTTATGGCATCCAGATACAGGGCAAATGGAGTCAAACTTCGGAAAAAAACTCCAAAGGATCTTCCGGCAGAGGAGCGCGAAATCACAACTTATTTGGACTTTGATGCGTGCGAAGGAGACTTAGACATAGGCAGTGATTTTCCTTTCCCTAACTTGTCTTTAAACGTCGCCTCTGTTGTTGTatgttgtgtttccatcattTGTTATTGGAACTCCTGCAAAGGGGAATTCGTGTTTGATGATTCTGAGGCCATTGTGAGCAATAAAGACTTGCGAGGTGAAACCCCGCTGGGAAAATTGTTCGTCCACGACTTCTGGGGAGCGAACTTATCTTCTAACGCAAGCCACAAAAGTTATCGTCCTCTTACAATTTTGACTTTTCGATTCAATTATTGGCTGGCAGGAGGAGTAAATCCTTGGAGCTTTCATGTTGTCAATGTCATACTCCATGCTTTGGTGTCAACATtgtctttgaattttttttcagtgctTGTCACTGACACCCACAAGCACcataaaaacaatttttccgcCCCCAAGGCCAGTTTGTTCAGCGCATTGCTTTTTGCAGTACATCCAGTTCACACAGAAAGTGTTGCAGGTTTGGTTGGAAGAGCAGATCTTTTGGGGGCGCTGTTTTTTATCCTCTCCTTTCTCTTTTACGCAAGATGTTGTATTGTTGATTGTGAAGAAGATTCATCTCCtaagaaattttcttggaaaTACCTTATGCTTAGCATGGCATTCTGTGGCATAGCTATGCTTTGTAAGGAACAAGGAATTACTGTCTTGGGAATATGCTCTGCCTATGATTTGATGGTGGTATGCAGAATTGATCCCCTCGTACTTATACAGACAAAGTTAATGTAcataaaagaaaacagaaatgggAACACAAAAATGgaaaaaaatgaaTCACATTTGTGGATTAAGGGTGTCATGTACAGACATGcagttttatttttcactgGAGTGATTCTTCTGCTTTGTCGCTGGCACATTATGGGCTCATCACCTCCAGTATTCCAAGTGGTGGATAATCCTGCTTCATTTGAGAAGTCTATTACTTTGAGGGTAATCAACTATAATTACCTGTATGCTATAAATGCCTGGCTTCTTATAGTACCCCAGtggctttgttttgattggtccATGGGCTGTGTACCATTAATCAAGTCATTCACTGATCTTCGTTTGCTCTGTGTCGCTGCTATGTGGGCTGTGCTGTTATTGCTTATCTCCTATTGTCTATTTGGCAAAAAATTGCACCTTAAGCGGATTCTGACCATGGGGCTGGCTCTGGTTATTGTTCCGTTCCTTCCTGCATCAAATCTTTTCTTCACAGTTGGTTTTGTGGTTGCTGAGAGGGTTTTATATCTTTCCAGTCTTGGTTCTTGTCTTATTGCAGTGCTTGGATTTGTGGTTCTGagtaagaaaaactttgcaggACAGAAGGCATTAGGTGGTATGATGTGGCTTGTTTTAACCCTCTACATTGCTCGTACAATTCAGAGGTCAGGTGAATGGATTGATGAAGACACACTGTTTACTTCAGGGCTTTCAGTTTGTCCTTTGAATGCCAAGGTTCATTACAATGTTGGAAAAATTAGAGCTGAAAAAGGAGAGGTGGTAATTGGCGAAAAATTTTATCGAGAAGCAATCAGGTTGAACCCAACATATGACCAAGCTTTGAACAATTTGGGGAATCTAATAAAGGATGATGGAAGGAATGAAGAAGCTGAGGGTCTTTTAGAAAGAGCTGTGAAGATAAGGAACAATTTTGCTGCAGGCTGGATGAACTTGGGAACAGTCAAGGCAGCATTGCACAAGGAAGAGGAAGCCGAAAGATGCTACAGAAGAGCCATAGTACATCGTCCAATATATCCAGATGCATACTTTAACCTGGGAAATCTGTACATTGACCAACATAAAACTTCGGAAGCCATCGCAGCCTTCAAAACAGCTGTCAATTTAAAGAACGACCATGTGGGAGCCTGGATGAATCATGCATTACTCCTTGAAAAGTCAGGTAACAGAGAAGCAGCTATATCTGTCATAAGAGAAGCCAAGAATCACATTCCCAATGAGCCTTCAGTTTATTTCAACCTGGCTAACATGCTTGGTCAGAAGGATGAGTTTTTAGAGGCCGAGAAAAACTTCATTAAAGCTTTGGAGCTCAAACCCGATTCTGCAGAGTTTTATGGAAACCTGGGAGTGTTGTATCACAGATGGGGAAAGCACGATCAAGCCAGAAAATTCTATCAAAAGGCGCTGAGGCTGGACCCTCAAAACGAAAATGTTTTGCAAAATTTACAGAAACTCAAAAGAGCGATGCAAAAATTGTCCACTGGCagatcaaaagaaaaataaggaaTGCCGGATAGAATGACTGCATACGTTGTCTTGTTTTATACAATCTTAACCAACTTTAAGAAAACTTCATTGTAATAACAACTTCAAGCACCATTCACTTTATCTTTTACATAGTCAAATGTTTGagttttcattgaaataaattgaaagaaacaaacagTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5T4D3	Protein O-mannosyl-transferase TMTC4 OS=Homo sapiens OX=9606 GN=TMTC4 PE=1 SV=2
Q8BG19	Protein O-mannosyl-transferase TMTC4 OS=Mus musculus OX=10090 GN=Tmtc4 PE=2 SV=1
Q7K4B6	Protein O-mannosyl-transferase Tmtc3 OS=Drosophila melanogaster OX=7227 GN=Tmtc3 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000831 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13432 all species →	TPR_16	Tetratricopeptide repeat	Repeat	Interproscan
PF08409 all species →	TMTC_DUF1736	Protein O-mannosyl-transferase TMTC, DUF1736	Family	Interproscan
PF13431 all species →	TPR_17	Tetratricopeptide repeat	Repeat	Interproscan
PF13424 all species →	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR013618 all species →	Domain	Protein O-mannosyl-transferase TMTC, DUF1736	Interproscan
IPR052346 all species →	Family	Protein O-mannosyl-transferase TMTC	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44227 all species →	-	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000030 all species →	Molecular Function	mannosyltransferase activity	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0030968 all species →	Biological Process	endoplasmic reticulum unfolded protein response	Interproscan
GO:0035269 all species →	Biological Process	protein O-linked mannosylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23424	TMTC; protein O-mannosyl-transferase	EC:2.4.1.-	Glycosyltransferases	ko01003	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068732644.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

28TPM > 0

1Conditions

16.3Max TPM

7.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	28	7.11	16.27

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	16.27
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	15.80
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	15.64
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	13.27
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	13.25
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	13.15
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	12.75
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	12.40
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	12.32
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	11.68
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	11.62
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	11.37
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	10.36
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	8.86
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	8.84
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	8.69
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	8.61
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	7.70
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	7.55
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	5.40
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	5.15
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	4.94
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	4.68
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	4.29
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	4.07
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	2.94
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	2.75
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	1.65
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.