Gene detail

Detailed information of XP_068732669.1 in Montipora capricornis

Genomic Location: chr13:35599341...35603284
NR annotation: XP_015766453.1, PREDICTED: trafficking protein particle complex subunit 4-like [Acropora digitifera]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9ES56	Trafficking protein particle complex subunit 4 OS=Mus musculus OX=10090 GN=Trappc4 PE=1 SV=1
Q69BT7	Trafficking protein particle complex subunit 4 OS=Rattus norvegicus OX=10116 GN=Trappc4 PE=2 SV=1
Q2TBL9	Trafficking protein particle complex subunit 4 OS=Bos taurus OX=9913 GN=TRAPPC4 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008307 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04099 all species →	Sybindin	Sybindin-like family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011012 all species →	Homologous_superfamily	Longin-like domain superfamily	Interproscan
IPR007233 all species →	Family	Trafficking protein particle complex subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23249 all species →	TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006888 all species →	Biological Process	endoplasmic reticulum to Golgi vesicle-mediated transport	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0030008 all species →	Cellular Component	TRAPP complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20303	TRAPPC4, TRS23; trafficking protein particle complex subunit 4	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068732669.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

28TPM > 0

1Conditions

61.2Max TPM

34.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	28	34.54	61.19

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	61.19
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	60.84
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	58.65
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	56.72
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	54.41
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	52.35
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	50.62
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	50.08
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	49.55
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	48.06
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	47.05
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	46.52
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	45.41
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	43.68
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	43.07
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	42.70
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	42.52
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	41.93
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	41.26
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	39.74
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	39.63
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	39.29
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	34.42
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	33.20
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	31.03
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	29.92
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	29.87
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	29.80
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.