Gene detail

Detailed information of XP_068732908.1 in Montipora capricornis

Genomic Location: chr2:58432166...58442727
NR annotation: XP_029182115.2, clathrin light chain A-like [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P04975	Clathrin light chain B OS=Bos taurus OX=9913 GN=CLTB PE=1 SV=1
P08081	Clathrin light chain A OS=Rattus norvegicus OX=10116 GN=Clta PE=1 SV=1
P09496	Clathrin light chain A OS=Homo sapiens OX=9606 GN=CLTA PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007272 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01086 all species →	Clathrin_lg_ch	Clathrin light chain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000996 all species →	Family	Clathrin light chain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10639 all species →	CLATHRIN LIGHT CHAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005198 all species →	Molecular Function	structural molecule activity	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0030130 all species →	Cellular Component	clathrin coat of trans-Golgi network vesicle	Interproscan
GO:0030132 all species →	Cellular Component	clathrin coat of coated pit	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0030125 all species →	Cellular Component	clathrin vesicle coat	Interproscan
GO:0032050 all species →	Molecular Function	clathrin heavy chain binding	Interproscan
GO:0072583 all species →	Biological Process	clathrin-dependent endocytosis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_068732908.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068732908.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

30TPM > 0

1Conditions

528.9Max TPM

318.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	30	318.87	528.89

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	528.89
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	524.47
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	513.24
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	491.38
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	474.07
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	464.07
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	430.52
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	419.74
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	406.76
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	405.61
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	388.39
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	383.04
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	361.81
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	358.08
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	357.92
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	357.48
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	357.05
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	356.18
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	340.42
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	338.92
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	338.55
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	332.54
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	331.24
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	330.94
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	327.67
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	323.61
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	319.53
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	312.45
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	311.58
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	293.18
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.