Detailed information of XP_068732945.1 in Montipora capricornis

Genomic Location: chr13:35667288...35685112
NR annotation: XP_029186140.2, integrator complex subunit 10-like isoform X2 [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q5ZLS8Integrator complex subunit 10 OS=Gallus gallus OX=9031 GN=INTS10 PE=2 SV=1
Q6TNU3Integrator complex subunit 10 OS=Danio rerio OX=7955 GN=ints10 PE=2 SV=1
Q8K2A7Integrator complex subunit 10 OS=Mus musculus OX=10090 GN=Ints10 PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004113 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF21045
all species →
INT10Integrator subunit 10RepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR026164
all species →
FamilyIntegrator complex subunit 10Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR16055
all species →
UNCHARACTERIZEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0016180
all species →
Biological ProcesssnRNA processingInterproscan
GO:0032039
all species →
Cellular Componentintegrator complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K13147INTS10; integrator complex subunit 10-Spliceosomeko03041deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068732945.1 across 36 RNA-seq samples of Montipora capricornis. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples
0TPM > 0
1Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
Polyps 36 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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