Gene detail

Detailed information of XP_068733069.1 in Montipora capricornis

Genomic Location: chr13:36434808...36442208
NR annotation: XP_029188347.1, rRNA 2'-O-methyltransferase fibrillarin-like [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9W1V3	rRNA 2'-O-methyltransferase fibrillarin OS=Drosophila melanogaster OX=7227 GN=Fib PE=2 SV=1
Q8I1F4	rRNA 2'-O-methyltransferase fibrillarin OS=Drosophila erecta OX=7220 GN=Fib PE=3 SV=1
P22232	rRNA 2'-O-methyltransferase fibrillarin OS=Xenopus laevis OX=8355 GN=fbl PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007026 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01269 all species →	Fibrillarin	Fibrillarin	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000692 all species →	Family	rRNA 2'-O-methyltransferase fibrillarin-like	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR020813 all species →	Conserved_site	Fibrillarin, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10335 all species →	RRNA 2-O-METHYLTRANSFERASE FIBRILLARIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0006364 all species →	Biological Process	rRNA processing	Interproscan
GO:0008168 all species →	Molecular Function	methyltransferase activity	Interproscan
GO:0000494 all species →	Biological Process	box C/D sno(s)RNA 3'-end processing	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0008649 all species →	Molecular Function	rRNA methyltransferase activity	Interproscan
GO:0015030 all species →	Cellular Component	Cajal body	Interproscan
GO:0031167 all species →	Biological Process	rRNA methylation	Interproscan
GO:0031428 all species →	Cellular Component	box C/D methylation guide snoRNP complex	Interproscan
GO:0032040 all species →	Cellular Component	small-subunit processome	Interproscan
GO:1990259 all species →	Molecular Function	histone H2AQ104 methyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14563	NOP1, FBL; rRNA 2'-O-methyltransferase fibrillarin	EC:2.1.1.-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068733069.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

28TPM > 0

1Conditions

127.2Max TPM

64.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	28	64.19	127.21

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	127.21
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	126.81
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	118.17
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	115.29
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	107.23
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	106.54
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	106.34
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	98.30
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	96.30
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	95.03
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	93.98
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	92.58
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	89.70
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	86.59
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	84.17
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	81.24
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	75.34
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	70.60
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	68.24
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	67.93
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	65.38
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	65.12
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	65.04
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	58.58
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	40.19
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	39.66
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	34.59
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	34.58
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.