Gene detail

Detailed information of XP_068733072.1 in Montipora capricornis

Genomic Location: chr13:30565618...30571637
NR annotation: XP_029189705.1, mannose-6-phosphate isomerase-like isoform X1 [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_068876971.1

CTCTTGTGAACGCCTGGTGAGAAATGGACTTTACCGTGATAATGGCAAcgtcatttccttttttttctggcaATTCATCAGTTTAAATGGCTTTTCCAGCAGACTCAGCTGAAGAGGTGGTTGAATTAAAATGTGCCGTTCAGTGTTACGCTTGGGGAAAGATTGGTTTGAGTAGCACTGTAGCCCAGCTAGCACAACACTCTTTTTCATTTAAGCTCAAGGAGGATAAACCATATTCTGAGCTCTGGATGGGAACGCATACAAATGGTCCATCAAAAGTGCTATTTAGAAAAGAAGAGGTCTTGTTATCAGAGTGGATTGATAAAAATACTCATGTTCTGGGAGACACAGTCAAAGAGGCATTTGATGGCAACCTTCCATATTTATTCAAAGTTCTATCAGTTAATAAAGCATTGTCAATTCAAGCACACCCAAGTAAATCTCATGCAAAACGTCTTCATAAAGAGAGACCTGATGTCTACAAAGATCCTAATCACAAGCCAGAAATGGCCATTGCTTTAACTGCTTTTGAAAGTCTCTGTGGCTTTCGCCCATTTGCTGAAATCCAGAACTATGTCAGGACTATACCTGAGCTTGCGTTTGTCATTGGAGAGGAGGCTGTGGATGCCATTGCAAGTGGTTCAGATTTTGAAGcactaaaaataactttcacttCTCTAATGGGAAGTAGCCCTGATGTTGTCTCAAAACATCTCCAGAATCTTGTGGACAGGATCACAAAAATGAAGTCCTCCAGCCATGACATCTCTCCGTACTGTGGGGAGCTACTTCTTAGATTAAACAGCCAATTTCCAGGAGATGTAGGCTGCTTTTGCATTTATTTCCTGAACTACATCACACTCAAACCTGGTGAGGCATTATTTCTTGGACCAAATCTACCACATGCTTATCTGGCTGGAGACTGTATGGAGTGCATGGCCTGCAGTGATAATGTTGTCAGAGCTGGATTAACTCCAAAGTTAAAAGATGTGGACACTCTCTGTCAAATGTTAGATTATGGTTGTCATACCAAAGAAGAGACTATTTTTCCATGTCGCCCAAGTCCAAGTGATCCTTATGTTTCAATTTATGATCCTCCTGTGCCTGACTTTgctgttgccaggatacagATTCCATCAAGCTGTCTATCATACAAGTTTCAAGGACTGAATGGACCAAGTATTGCCATAATGATCTCAGGATCAGGCACCATACATAAAACTTCTACCAATTTGAAAATAGATTTAAGAAAAGGAACTGTGGTATTCATCCCAGCAAACACATGTTTTGAGTTGAAATGTGATGGGGTAGACTGTGAAATTTATCAAGCCTATTGTGTCTTGTAGTTTAGACATGATTCTCAACATTTCAACTGAGTTTCATTTGAGAGAAATGAGCAAGTAAAGAAGCTAATAAGACTTTATGCCCCCTACAGTACTGTATAACATAAATGGGTTGCGTAGAAAAACCTATCTTTTATATCATTTACTTGTAGATTATTTTCTTTTGGTTCAGATTTATTGGTAAATTCCTGGAATAGCTTTGTACTGCATCTTGTGCAAAAAGTACAGTTGCTTATAGCAAAATGGaaatataaatttaaaacaatatcATAATAACTTGTTATTGAGTGGGGATATTGATAGGTTCCATTAAATATTAAAGCATTTAGCTCAATAGGACTTAGCTTCATACATGTTGCAATTTTCACGAAgtaaggaattttatttctttacGAAAGGGTAGGGTTGGTATCACTATGAGCTGATCTGGCATTTGTTTGATATGTACTTATTGCCAAATTTTTTGAGggttataataaataatataaatagCTGTTATAACTAATCCTGATACATATAAATTGCGTTAGCCTGAGaggaaaataagggaaaagaCTCTTAACGAGTCGAAAAGGAAGCTGATCAGTTAACATACAAACAAAAACTAGAAAGATCAATGTAGCtcatatcaacattcatctcctcagtttcaagaattttcaaaagtaggTGAGTCAGctggcttaaccctttaagccccgaggggttccccattgacgagtaaatcgtctgtcgttagacagagtaaaatctataagtgccatttggcactctcggggctgaaagggttaaacggggacatagttttttaatgctgttagcttaaccctttaagccccgaggggttccccattgacgagtaaaatcgtctggcgttagacagagtaaaatcgtctggcgttagacagagtaaaatctataagtgccatttggcactatcggggctgaaagggttaaacggggacatagttttttgatgctgttagcttaattgagtacaaaatatattgccctTTTGTGCCATTGAAGTGCTTGATTGGAAGCGAGTATTGAACACATAAAAAGCCATTATGTCATTATTTCGTCAGGAGCGACAGTCATTGACCCAACTGTAATTTTCCCAGTATTTTTCGTATTCTTAGACAAGAGAAGTGAATTTGTTGTGCTGTTTTATTGAAGCGAGTTCAGAGATTGGGTTGGTGGGGAAATTAAATATTTGCAAGCCAAGCAAAGAACATGTCAGAacttggtagggaaataaccaccgtacaaaagatagccgtggataacgtaattcttgaattgTTTGACTACTTTGCTAGCCGTTTACTTatgcaaaaaaacaattaaatttaattgtgatTTTTAacaaagaaa

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3SZI0	Mannose-6-phosphate isomerase OS=Bos taurus OX=9913 GN=MPI PE=2 SV=3
P34949	Mannose-6-phosphate isomerase OS=Homo sapiens OX=9606 GN=MPI PE=1 SV=2
A5A6K3	Mannose-6-phosphate isomerase OS=Pan troglodytes OX=9598 GN=MPI PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005410 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20511 all species →	PMI_typeI_cat	Phosphomannose isomerase type I, catalytic domain	Domain	Interproscan
PF20512 all species →	PMI_typeI_hel	Phosphomannose isomerase type I, helical insertion domain	Domain	Interproscan
PF01238 all species →	PMI_typeI_C	Phosphomannose isomerase type I C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011051 all species →	Homologous_superfamily	RmlC-like cupin domain superfamily	Interproscan
IPR014710 all species →	Homologous_superfamily	RmlC-like jelly roll fold	Interproscan
IPR046457 all species →	Domain	Phosphomannose isomerase type I, catalytic domain	Interproscan
IPR018050 all species →	Conserved_site	Phosphomannose isomerase, type I, conserved site	Interproscan
IPR046458 all species →	Domain	Phosphomannose isomerase type I, helical insertion domain	Interproscan
IPR001250 all species →	Family	Mannose-6-phosphate isomerase, type I	Interproscan
IPR016305 all species →	Family	Mannose-6-phosphate isomerase	Interproscan
IPR046456 all species →	Domain	Phosphomannose isomerase type I, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10309 all species →	MANNOSE-6-PHOSPHATE ISOMERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004476 all species →	Molecular Function	mannose-6-phosphate isomerase activity	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0009298 all species →	Biological Process	GDP-mannose biosynthetic process	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01809	manA, MPI; mannose-6-phosphate isomerase	EC:5.3.1.8	O-Antigen nucleotide sugar biosynthesis	ko00541	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068733072.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

30TPM > 0

1Conditions

55.7Max TPM

27.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	30	27.50	55.74

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	55.74
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	46.56
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	40.33
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	40.28
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	38.87
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	38.60
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	38.56
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	37.67
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	36.38
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	35.97
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	35.80
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	35.31
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	34.34
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	34.20
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	33.92
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	33.87
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	33.25
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	32.19
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	31.29
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	29.97
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	28.36
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	28.00
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	27.98
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	26.97
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	24.94
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	24.86
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	22.60
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	22.58
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	22.28
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	18.25
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.