Gene detail

Detailed information of XP_068734095.1 in Montipora capricornis

Genomic Location: chr2:61161827...61175904
NR annotation: XP_029212955.2, LOW QUALITY PROTEIN: calcium-binding mitochondrial carrier protein SCaMC-2-like [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_068877994.1

CATTCCTGGTTGAAGTGGTTAAAGTGAAAGATGGTAAAATTTCTTATGAAAACCGGATGGCAAATATTCTAAAACAATATCTTCAAAGGTGCCGAATCTTAactttaaaatggaaattcGATAAGTGCTCAAATTCACCAAGATGCGTCGAGGCCAGGCTGCAGAGCTAGAGCCGCACGGCCATCATGGTTCTGGAGATGTAAACATGTTCCATGGTTCAGATGATTTAGATCACAAAAAACACAACGAAGAAGGCTACCAGATGGATAAAGAGGAAATAGAAGATCTGTTCAAGAAGCTTGACAAAAATAACGATGGAAGAATAGACGTTTACGAACTCGCAGAAGGTCTGAAACACATtcatggatcgcgatacaaagcCGGCCAAGCACAGCAAATTATGAGTTTAGGGGATCAGAACCTTGACGGGCATATGTCATTTGAAGAATTTGTAAAGTATGTGACTGATCATCAAAAGAAACTTTGGATTGTTTTCAAGACCATTGATCAAGATGGCAGTGGAAGTGTGGATACTTCAGAGCTTAAGAGAGCTTTTGAGAAGATGGGTGTTAATGTGACAGACAAGGAAGTGGCTCTCTTGCTTAAAAGCATGGATAAAGATAAGACTCTGAAAGTGAACTGGAATGAATGGAGAGAATACCACTTGTTGAATCCCAGTGGCCACAGTATGCATGATATAATTCAGTTCTGGCGGCATAGTATGGTCATTGACATTGGGGAGGACATGACCATCCCTGATGAGTTCACAGAGGAAGAGAAAGTCACAGGAATGTGGTGGAGACAGTTAGTAGCCGGAGGTGGTGCAGGAGTTGTTTCCAGGACAGCAACAGCACCACTGGATAGATTAAAAGTTTTACTACAGGTGCAAGCTTCAAGTCAGAACAGGATAGGAATTACATCTGGTTTTTCCATGATGATAAAGGAAGGAGGAATAAAATCTTTGTGGAGAGGAAATGGTGCCAATGTAGTTAAAATTGCACCAGAGTCAGCAATAAAATTCTTTGCTTATGAAAAGgcAAAGAAATTGTTAGGCGCAGATGAAAAGCAGCTTGGAGTTAGTGAAAGGTTAACAGCAGGTGCTATGGCTGGTGTAGCATCACAAACCAGCATATATCCTCTGGAGGTTTTAAAAACAAGGCTAGCTCTTCGTAAAACAGGGCAATACAGAGGACTCGTTCATGCTGCGTATGTGATATTTACAACTGAAGGAATCAGGAGCTTTTATCGTGGATTATTTCCTAGTCTGCTTGGAATCATTCCTTATGCGGGCATAGACCTTGCAGTGTACGAGACGCTTAAAAACTTTTACTTAAATTACCACAAGAATGAGTCTGCAGACCCAGGAGTGTTTGTTCTGTTGGCCTGTGGTACAGTATCAAGCACATGTGGACAGTTAGCAAGTTACCCTCTTTCCCTAGTCAGGACAAAGCTCCAAGCACAAGcACGTACCCGGGACGTTCACACAGGAGATAACATGATTTCAGTTTTTAGGACAATTTTTAAAGAAGATGGACCGCGTGGACTTTACAGAGGTCTGGCACCGAATTTTATGAAAGTTGCGCCCGCAGTCAGCATTAGCTACGTCGTATATGAACGCTTAAGAATGAGCCTTGGAGTTATCTAGCACCTCGAATGATGTTTTATTCGTCACTTGAAATGCATCGTCAAAAGCCAAGAAATCTTGGTTGTTCAAGCTTATGGCAATTCCAGGAACATATTTTGGTTTCTACACCGAGACTATGCTTTTTAGCTGCAAATTGTACAAAATTATCGCCAATCGAGGTGCCAAATTATGTGTTAAGGTGTTCAACACTCGACTTGTGGGAATTTAAATTGCCtgctttattttaaatttaagggATAATGTAAGGGACAAGTTAATCTCACATAAGtcacccattttttttttaagtttctttttgttgaagattttTTCTCTCGTCCGCAAGGATTTGAAAAAGCCACGGAAATAATGAATCAGAACGTCATGCTAGAATGCAATTGTATTGCAGATCGGTCGTTTCCTCTAAAACCCGGCAAGGAAGAGCAATTGCCTCCAATGCTAAACCTTCGAGCTAGGCGCAAGTCTCTAGAGCTAGTCTCGCGGTTCATTTTTGCCGCTCGTTACAGACTTTTTGAATCGTTCCTTGAGCTTGAGCTTGAGCTTGAGCTCCAGCACTTGGCACTTGGCTCCAGCACTTCCCCTATTAACTGCAAGTTATTGTGTGACTCGCGAGAACCTGATGAACAATTTCCTTTGGTTAATATTGGGAGGGGCGCCTGTTTGGCAGGTGCCTAAGATccagggaaaaaaatatatgactTGAGACTCTCGTCTCAGAAAGGCGAGTTTCCCGCTTTCCTTCCCTCAGTATGGTGGCAAGGAAACGAAGACGGCTTTTAATTGCAGGCTAACTGGGTCGTTCTCCCACTTGTTTCTCCATACTGGTCCACACCAGCGTTATTTTGAAATTGGAGTGTCACTTGTGAAATAATGAATTTGTGAGACTTCATCTCGTAAAATCCATAGGAGTTGTAGGCAGTCGGCCACAAGCTCTGGACGAAGTAAAGTTTGTTGTTCACTTGCAATGCCA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7T0U6	Mitochondrial adenyl nucleotide antiporter SLC25A24-B OS=Xenopus laevis OX=8355 GN=slc25a24-b PE=2 SV=1
Q5XHA0	Mitochondrial adenyl nucleotide antiporter SLC25A24 OS=Xenopus tropicalis OX=8364 GN=slc25a24 PE=2 SV=1
Q6KCM7	Mitochondrial adenyl nucleotide antiporter SLC25A25 OS=Homo sapiens OX=9606 GN=SLC25A25 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003641 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00153 all species →	Mito_carr	Mitochondrial carrier protein	Repeat	Interproscan
PF13499 all species →	EF-hand_7	EF-hand domain pair	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002167 all species →	Family	Solute carrier family 25 member 16-like	Interproscan
IPR018108 all species →	Repeat	Mitochondrial substrate/solute carrier	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR023395 all species →	Homologous_superfamily	Mitochondrial carrier domain superfamily	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR002067 all species →	Family	Mitochondrial carrier protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24089 all species →	SOLUTE CARRIER FAMILY 25	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005743 all species →	Cellular Component	mitochondrial inner membrane	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005347 all species →	Molecular Function	ATP transmembrane transporter activity	Interproscan
GO:0015866 all species →	Biological Process	ADP transport	Interproscan
GO:0015867 all species →	Biological Process	ATP transport	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14684	SLC25A23S; solute carrier family 25 (mitochondrial phosphate transporter), member 23/24/25/41	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068734095.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

30TPM > 0

1Conditions

57.4Max TPM

22.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	30	22.00	57.40

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	57.40
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	37.88
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	37.23
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	36.22
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	36.00
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	35.24
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	34.39
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	32.95
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	29.38
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	28.05
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	27.84
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	27.76
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	27.11
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	27.09
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	26.49
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	25.27
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	24.36
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	23.58
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	22.95
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	22.22
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	21.42
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	21.16
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	19.64
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	19.46
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	19.38
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	18.04
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	14.49
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	13.76
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	13.52
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	11.61
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.