Detailed information of XP_068735022.1 in Montipora capricornis

Genomic Location: chr14:31118936...31185029
NR annotation: XP_029205878.2, calcium-activated potassium channel slowpoke-like isoform X2 [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q90ZC7Calcium-activated potassium channel subunit alpha-1 OS=Xenopus laevis OX=8355 GN=kcnma1 PE=2 SV=1
O18866Calcium-activated potassium channel subunit alpha-1 (Fragment) OS=Sus scrofa OX=9823 GN=KCNMA1 PE=2 SV=2
Q28204Calcium-activated potassium channel subunit alpha-1 OS=Bos taurus OX=9913 GN=KCNMA1 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001657 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07885
all species →
Ion_trans_2Ion channelFamilyInterproscan
PF21014
all species →
Slowpoke_CCa2+-activated K+ channel Slowpoke, TrkA_C like domainDomainInterproscan
PF03493
all species →
BK_channel_aCalcium-activated BK potassium channel alpha subunitFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013099
all species →
DomainPotassium channel domainInterproscan
IPR048735
all species →
DomainCa2+-activated K+ channel Slowpoke-like, C-terminal domainInterproscan
IPR003929
all species →
DomainCalcium-activated potassium channel BK, alpha subunitInterproscan
IPR047871
all species →
FamilyCalcium-activated potassium channel slowpoke-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10027
all species →
CALCIUM-ACTIVATED POTASSIUM CHANNEL ALPHA CHAINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0006813
all species →
Biological Processpotassium ion transportInterproscan
GO:0016020
all species →
Cellular ComponentmembraneInterproscan
GO:0005267
all species →
Molecular Functionpotassium channel activityInterproscan
GO:0045211
all species →
Cellular Componentpostsynaptic membraneInterproscan
GO:0060072
all species →
Molecular Functionlarge conductance calcium-activated potassium channel activityInterproscan
GO:0071805
all species →
Biological Processpotassium ion transmembrane transportInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K04936KCNMA1, KCA1.1; potassium large conductance calcium-activated channel subfamily M alpha member 1-Ion channelsko04040deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068735022.1 across 36 RNA-seq samples of Montipora capricornis. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples
0TPM > 0
1Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
Polyps 36 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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