Genomic Location: chr14:31118936...31185029
NR annotation: XP_029205878.2, calcium-activated potassium channel slowpoke-like isoform X2 [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families
| CDS |
| LOC138031237 |
| Transcript |
| rna-XM_068878921.1 |
| Protein |
| XP_068735022.1 |
| UniProt accession | Description |
|---|---|
| Q90ZC7 | Calcium-activated potassium channel subunit alpha-1 OS=Xenopus laevis OX=8355 GN=kcnma1 PE=2 SV=1 |
| O18866 | Calcium-activated potassium channel subunit alpha-1 (Fragment) OS=Sus scrofa OX=9823 GN=KCNMA1 PE=2 SV=2 |
| Q28204 | Calcium-activated potassium channel subunit alpha-1 OS=Bos taurus OX=9913 GN=KCNMA1 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001657 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF07885 all species → | Ion_trans_2 | Ion channel | Family | Interproscan |
| PF21014 all species → | Slowpoke_C | Ca2+-activated K+ channel Slowpoke, TrkA_C like domain | Domain | Interproscan |
| PF03493 all species → | BK_channel_a | Calcium-activated BK potassium channel alpha subunit | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR013099 all species → | Domain | Potassium channel domain | Interproscan |
| IPR048735 all species → | Domain | Ca2+-activated K+ channel Slowpoke-like, C-terminal domain | Interproscan |
| IPR003929 all species → | Domain | Calcium-activated potassium channel BK, alpha subunit | Interproscan |
| IPR047871 all species → | Family | Calcium-activated potassium channel slowpoke-like | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10027 all species → | CALCIUM-ACTIVATED POTASSIUM CHANNEL ALPHA CHAIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0006813 all species → | Biological Process | potassium ion transport | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0005267 all species → | Molecular Function | potassium channel activity | Interproscan |
| GO:0045211 all species → | Cellular Component | postsynaptic membrane | Interproscan |
| GO:0060072 all species → | Molecular Function | large conductance calcium-activated potassium channel activity | Interproscan |
| GO:0071805 all species → | Biological Process | potassium ion transmembrane transport | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K04936 | KCNMA1, KCA1.1; potassium large conductance calcium-activated channel subfamily M alpha member 1 | - | Ion channels | ko04040 | deepkoala |
Transcript abundance of XP_068735022.1 across 36 RNA-seq samples of Montipora capricornis. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| Polyps | 36 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM,
StringTie quantification over 36 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.