Gene detail

Detailed information of XP_068735099.1 in Montipora capricornis

Genomic Location: chr14:48632467...48647960
NR annotation: CAH3181721.1, unnamed protein product [Porites lobata]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A0A4X1TB62	Dynactin subunit 4 OS=Sus scrofa OX=9823 GN=DCTN4 PE=1 SV=1
Q9UJW0	Dynactin subunit 4 OS=Homo sapiens OX=9606 GN=DCTN4 PE=1 SV=1
Q5R7U7	Dynactin subunit 4 OS=Pongo abelii OX=9601 GN=DCTN4 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003870 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05502 all species →	Dynactin_p62	Dynactin p62 family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007527 all species →	Domain	Zinc finger, SWIM-type	Interproscan
IPR008603 all species →	Family	Dynactin subunit 4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13034 all species →	DYNACTIN P62 SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005869 all species →	Cellular Component	dynactin complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10426	DCTN4; dynactin 4	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068735099.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

29TPM > 0

1Conditions

70.2Max TPM

32.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	29	32.49	70.18

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	70.18
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	67.94
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	67.69
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	64.52
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	60.50
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	58.69
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	56.02
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	53.60
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	49.92
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	47.92
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	44.37
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	39.73
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	38.12
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	34.07
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	33.93
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	33.23
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	32.69
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	31.90
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	31.03
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	30.19
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	29.92
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	29.86
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	27.97
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	27.47
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	25.68
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	24.62
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	23.33
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	22.78
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	11.67
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.