Gene detail

Detailed information of XP_068735803.1 in Montipora capricornis

Genomic Location: chr14:45490640...45506493
NR annotation: XP_020621270.1, Niemann-Pick C1 protein-like [Orbicella faveolata]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_068879702.1

TTTACAGGTTCCACTGGTTCCACAGGTTACACTGACGTCACTGCTAATCTATCTCAAAAAATCCTGTGGTTGAAATAAATTGTCGTGTAGCCCCAATTTACGACAATTCTTGTTCAAGAAAAGGAGAGACGCAGTTTCGGAAGCTACAAAGTCGTCTTTGATAAGCTTTGATGATCAGTCATGTTGCTTCGTTCGGCGATGCTCGTGTTTCTGTTGGCCATATTGTTCGATGCTCAGGTCAAAAGCGAAGAGTAtgcaaaatatcacaaaaaggGATATTGTGTCTGGTATGGCCAATGCACAAGTGAAACTAAACCCAAAAACTGCTTTTACAATGGACCAGCAAAGGAGCTTAAGGATCCAGAAGGTGTAAAATTATTGAACAGCATCTGCCCTGAGCTACGTGGTCAACGTACTTGCTGTGACACTAAACAGATAAAAAGTCTGGTCTCAAGCTTACAAACAATGAGACAACTAACATCTCGTTGCCCAGCTTGCTGGAACAACATGAGGAGGCTTTCTTGTGAGTCAACGTGTGACAGGGATCAGTCTTTATTTTTGGACCCAACTTTGATTattaacaataaaacaatttttcaaattaGTTACTTTGTATCGGAGAAATTCAAGCAAGGATTGTAcgactcctgcaaagaagtCACCTTCCCTGGCTACAATGAAAAGGTGATGGATCTGCTTTGTGGACAATCAGCAGAAACATGTTCTCCGCAAAAGCTGCTTGATTATATGGGAAATACCTTAAATGGGTATGCTCCATTCACTATTAAATTTCCACGAAAACTTACACCTAACCTTCACTGGATGAACAAGACAATCCTTAAGTGCAATGAGTCATTTTTTGATCTTCAAAATAACAGGACAGCCAACCCATGCAGTTGTCAAGATTGCACACAGTCTTCATGCCCTGCGCAACAGAACGAAAGTACGAATGATTCCACGGTCAATCCATTGCTTCGCATGGAGCGGCTGATCATTCGTCCAACACATCCTGTTCCCACTGGTTACCGCCATTTTGGTGACGGAAAATGGATTCCATTTGGACCTATCTTTCATTTGGATTTATTAAATAAGgcTCTTCACCTTCAGAACAAGATTTCTAACATGAGGGTGCCATTTGGTTCAGGCCACATCACACTGGAAGACATCTGTTACCAGCCACTAGCTCCACAAAAACATAAATGTACCATTCAGAGCATCTTTCAGTACTTTCAGAACAATAACACAAGACTGAACAAGTGCCTTACCAGCTTGGGAGACATGTGCAATAATGAGACGTTGTCCTTCGACTTCAAGGCTTATGATTTCCATGATCATATCTGGCTTTGCACAAGCTCTCCATTTTCATATGATGGCTACATGAACCTTCCTTGCCGTAGTGCCTATGGAAAACCAGTGATGCCAGACATTGTTCTCAGAGGATTCAACGGCACTAACTATAAAGACGCATCAACGTTAATCATCACCTTTGTCGTCAACAATTTCAAAGATCAAACCAGACTTGAAAAAGCATTAGCGTGGGAGCAGGCCTTTGTAAATTTCATGCGAGACTATGTAAATAACCCTGAGAACGAAAACCTAACCATCAGCTACAGCGCCGCCGAACGATCCTTACAGGATACAATGGAACGCCACGGAGAGAGCAACACCGATATTGATATCAGGGTTTAGAATCGAGGTCGATCGCTTTGATACCTTAATTAAGGCTCTTGAAAGCGCACGTGAACCAAGTACAAGAGACTTTATATTTACGGCGCTACGATTACGTCGTCAACTAGGATGCCACTAGGGCATTATAATGTAAacgatatacatatatatatatatatatatatatatataggtacAATCGCTGTGCACgtgctttttaaacttttgctTTTTGACAGGTGCAATCACTTGACTTGATGTCACAAGCtttttttgaaacaatattGACATTTTGATGAGATCCGAATAAATCCTTAAAAAACAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q19127	NPC intracellular cholesterol transporter 1 homolog 1 OS=Caenorhabditis elegans OX=6239 GN=ncr-1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001652 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16414 all species →	NPC1_N	Niemann-Pick C1 N terminus	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032190 all species →	Domain	Niemann-Pick C1, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45727 all species →	NPC INTRACELLULAR CHOLESTEROL TRANSPORTER 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0015918 all species →	Biological Process	sterol transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0032934 all species →	Molecular Function	sterol binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_068735803.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.