Gene detail

Detailed information of XP_068735971.1 in Montipora capricornis

Genomic Location: chr14:42927283...42941267
NR annotation: XP_029213489.2, 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase-like [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_068879870.1

TTGGGAACGAGATTGTTGCTGAATCTGATTTGCCTAATTTTGTCGGCGCTTTTGCTCGCGTGATTTGAGGAAAAAAGTACGACCGCTCGTATTCTACCTATTGTGTTATTTGGTACATCATCAATCGATTGCAATGGTGCAGGCATGGTTTATGGACTCCTCAGATGAGGATCAGAGGCTTCCGCATCAACTTGATCCCCCACAGCCAGTTTCCCTGGAGGACTTGGCAAACGTTGGAGTTTTGTACTGGAAGTTGGACGCTGACAACTTTGAAAAAGAAGGTAAACTCGCAGAGATCCGTACACAACGAGGCTATACTTACAGTGATTGTATTACATGCACCCCAGAGAAACTTCCCAACTATGAACAAAAGCTCAAGAGTTTCTTTGAAGAACATCTGCATTCAGATGAGGAAATAAGATTCATTCTTGATGGAAGTGGTTATTTTGATATCAGAAATTATGATGACAAGTGGATTCGCATTATGGTGGAGAAGGGTGACTTGATCATTCTCCCTGCTGGCATTTATCACCGTTTCACTTTGGACAGTAAGGACTACATCAAGGCTATGCGTCTGTTTATTGGTGAGCCAGTGTGGACACCACACAACAGGCCCTCTGATGAACTCCCAGCACGAGTGGAGTATGTCAAGAAGATGAAGGGAGGACATTATCACGAAGCATGACTTCCAGCCTCATTGCTTAGCTATCATAATACTTTTTAGGGGGTGAAAGGTGCCTATCTTAGGGAGGTAGGAGAGCGGGGAGAAGAGGTGTTGGGCTAGCACCGTAGAATAAgagaatctttgctgacgtcgtTCAAGGTTTACATTTTGTCTcatcagggagcttaagcaacgacaacggcgatggcaacaagaacgtcacaaaatgCACATTTACtgtgcaaaaacaatagctttgcaagccctgcacgtgcgcttttcagttttgttcatttctttgccgtcatcagcaaaacaacaacgtgaaatagccaaatttgagattttatgaagaacgtcagcacttgaggataaattttcattttctccactaaattaagcgccgttccgacgaGTGTTACTTTTGAGAAACTACCACGctcttgtcatattaaaaagattgaaatagtcacgaagcgattaaaataacgcgaatttatattttgagatgaagttctcgttgctgtcgtcgttgtcgttgcGTAAGTAGTTCCCTATTAACATACGAATTTGGTCACAGAAGGCagcatgctatttacaaattgacttcaaaaggtaacaGAACTAGTTAAACGTagttaagaaacggtccagataagaacgatagcaacaacggcaacgaacatgttttctattgtctgtacttacttctgattggcttaaacagcaaaagttaacaaaacttcataaaagcagtattatattcattcttactttccaaccatctttcatctggtctcagtttaaatgaattccacagaaatcgtatgtggggaacatgtaaaattgtaaacgtttcttggcttttgttttcaactcttgtgattggtcaaaatcttttaacacaaaaaaacaccctttcaaagtgggctgtaactgaattttattgcgttaacggctttcctgtaggtttatgcattctctgtgtaaaaatgataacattcctatgtgggggaAGCCCccttgccgcataacaaaggaaattgctatccaccttacacggatcattacttaaatcTCCAGTCTTACGCCTtctagctttgataacgagccagttattagccatcaaaaactgataaatttttGGGTGGCAAAGGCGCTaatgaattttcaaagcatcatttctCGGAGATTTCtggtaacaataataatcatcatcatcatcatcataataacaataataataataataataataataataatgatgatgatgatgatgatacgtTTATTCACTCTTTGGTAGCATTTGCTAAATTACAAGAGGGGTCAGTAACTAGAAAATGCATAATAGCACGAGATTGCAAAACTTACAAGGACAAAAATAACGGTTACCCGTACTTGAAAGTAATAAACCTATCAGTGCGCAGaagtctgttgttgttgttgacgcACTGCCTAGCTGTACCCGAGCGGAGACCGTATCCATGGCTGACCATCCATGACTGGTATCCATGGTATACCTGGTTCAAGTTTTCAAAGATCAGCACATTATGCAACGcattttcaatattcagtactttattctcggctgactgattagTCTTCAATAGCAATCAATTGAAAAATGTACTTATCTTTTACCCTCTTAATCCAACATACTCGCCATAAGTTAAAAGGGTTAGAAGGTCGATAGAACAATCCACCGGATAAGCCACTCAGTATCACAAGCGTTATCGAGACCAAGTGATGTGTCCACTAGGTAGTGCACTAGTGCTGCAATTCTGAAAATTCTCCACATTGCCTTCATAACACATGATCGATAAAAAGTATGGAGAATATGCGTGTTCATATTAGGATTTACTCCATCTCACCTTCTCAAGAAGCCCAGTCTCTTCCAATCGTTTTGGCAAAAGTCCCACCGCACCTCTGTCAAGTTGTTCCAAAGTAcagtacatacttaattgaccgctccccataggggcttttcagggccaatgaaacacaatcaacaaaaTAACAGAAATTTTATGCGTTTCACTGTGTTTTGTCTGCATGAAAATGTGCAAGAAGATAAACTATGTAGTCATTTGTGTTTCTGACTGGCAAAATAAAGAGCATCTGCTACATTGGCATGTCAGTGTGGCCAACTTtaagaaa

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
C3ZAH2	Acireductone dioxygenase OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_119977 PE=3 SV=1
Q562C9	Acireductone dioxygenase OS=Rattus norvegicus OX=10116 GN=Adi1 PE=2 SV=1
B7PRF6	Acireductone dioxygenase OS=Ixodes scapularis OX=6945 GN=IscW_ISCW007295 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009488 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03079 all species →	ARD	ARD/ARD' family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011051 all species →	Homologous_superfamily	RmlC-like cupin domain superfamily	Interproscan
IPR004313 all species →	Family	Acireductone dioxygenase ARD family	Interproscan
IPR014710 all species →	Homologous_superfamily	RmlC-like jelly roll fold	Interproscan
IPR027496 all species →	Family	Acireductone dioxygenase, eukaryotes	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23418 all species →	ACIREDUCTONE DIOXYGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0010309 all species →	Molecular Function	acireductone dioxygenase [iron(II)-requiring] activity	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0019509 all species →	Biological Process	L-methionine salvage from methylthioadenosine	Interproscan
GO:0006555 all species →	Biological Process	methionine metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08967	mtnD, mtnZ, ADI1; 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase	EC:1.13.11.53 EC:1.13.11.54	Cysteine and methionine metabolism	ko00270	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.