Gene detail

Detailed information of XP_068736071.1 in Montipora capricornis

Genomic Location: chr2:67835327...67868606
NR annotation: XP_029197921.2, LOW QUALITY PROTEIN: phospholipase D1-like [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC138032308

ATGAAACAACAGGCAGATCATATGGAAACATCATCTTTTTCACAACCAGATGCTAATGCAAAATTGGAAGAGGAAATTTCAGTTGAGAAACCTCTGAGAGAAACTCCATCACTTACCAACCAGAGGACCTTTATAGATTCTAGATCTGGTTCAGTTTGTATCTATCTAGATGAAGACGAACATGACATTTCAGCCATTGGTGTTACTACTGTTCCTTGTGCTTCTCAAGAAACAAAGAAACCTGTGTTTATTCCTGGACTTAAAGTCACTGCCAAGATTATTGATGTTGAACGGGCACCAAGAACTCATCCATTTAACCCTAACCTATACACCATCAAACTTACTCATGGTAACTTCAACTGGGAAATCAGACGCCGTTACAAACACTTTATAAAACTTGATGCTGAACTGTTTCTCCACAGAATAAATGTGCCTCATCATGTTATTAGAGGACGGGCTGGAGAAATTCGGAATTTGCCAAGTAGACACTTGCCCAAGAGACCAGACATGTTTGCAACCACTCAAAACATGGAAAAGAGAAAAAAATCCCTTGAGAAGTATCTGCAGATTATTCTAGATAATTCTAACTATCTCCATCGCAAGGAGACACTAAGTTTCCTGGAAGTCAGCCACTTCTCCTTTCAGCACGAATTGGGTGAAAAAGGAAGGGAAGGTATACTGAGAAAGCGGTCTGGAGGACATCGGTTTCCAGCTGGTTGTTGTAGCTGTTGTTCTGGTTTGTCTTGGGGAATATGGAACAAGAGGTGGATCGTGGTGAAGGACAGTTTTATAGCTTATGTGAGCCCCAGAGATAAAGAAGTGAGAGGAGTGCTGCTAATGGACAAAGAATTTACATTTAAGCATGGAAGGAAGCAAACTGGTTTGCAAAATGGCTTGCTGGTTCAAAACCAGAGCAGAGAACTTCTTTTATCTTGTTGGACGGAAAGAAAAACAAGAGAATGGATGAAAGCAATCATTCACATGATGGCAACCAAAGGTGCTGAATGGACAAAAGATCATCCTCACTATTCATTTGCTCCTGTCAGGCAAAATGCTGCTGCTCAATGGTATGTGGATGGAGAGTCATATTTTGATGGAGTAGCAGATGCATTAGAAGCTGCAAACGAAGAAATCTATTTAGCTGGCTGGTGGATCAGCCCAGAGCTTTATCTTCGTCGACCAATCACTGCTGGCCATGAATGGAGACTGGACTGTATTCTCAAGAGAAAAGCAGAGGAAGGGGTGAAAATTTTCATTCTAGTTTACAAGGAAGTGGAATTTGCACTGGACATTGACAGTGCCTACACTAAAGCCAAACTTATGAGCTTGCATTCAAATATCAAGGTTTTACGGCACCCGGACCACATTACTGGGGCAGGTGTGATGCGATGGGCTCATCATGAAAAGTTGGTTGTTGTTGACCAAAAGGTTGCTTTTATTGGAGGACTTGATCTGTGTTTTGGTCGCTGGGATAACAGCTTTCATCCTCTGACTGACTTTGGATCCGTTGTCCCTCCTCAGGATATAAACAACACGGAAAAGGAGATAAGAAAAATCGGCGCCATGATTGTTGAGGGATCCATAAACGGACTGAAACTACCCACGTCTTCAGACTTGATGGCTGGTCTTGAAATTGAACCTGGTGCAAGAGGAGGAAGTAAGATGTGGCTGGGAAAAGATTACGCAAATCCAATCAACAAAGACTTTTGTGAACTGCGCAAACCTTATGAGGATTCTGTAGACCGAGGGACGGTTCCTCGCATGCCGTGGCATGATGTTGGAATGTGTATGTTTGATGCATCAGCGAGAGATGTGGCCCGACACTTCATCCTTAGGTGGAATGCGACGAAGTGTGGAAAGGTTAAAATGTATCCCGACATTCCTTTCCTGCTTCCAAAGTCGTACTCTGATCTTGTCACTGACAGGTCAGCGGCTTCGAACAGCACGAGTTCAGTGGATTGTCAGATTCTTCGTTCCTTGTGTGAGTGGTCGGGTGGTATTCCTGTGGAATGCTCTATCTATTCGGCTTACATCAAGGCAATAAAGGAAGCTGAACACTTCATTTATATTGAGAATCAGTTTTTTATTTCCTCTCTGTTCATCGACAACGTCAAGAATGAGATTTGCCAAAACCTTTTGTGGAGGATACTAAGAGCGCACAGAGAAGAAGAAAACTTTAAAGTCATCGTAGTCATGCCACTTTTGCCAGCATTTGAAGGGGAGATTGGAAAAGCCACTGGTCGGTCGACCGGCGTCATTACTCATTGGAATTATCGCTCAATTTGCCGTGGCTCGCAGTCCTTGTTGGCAAGACTCGAAGAGCTTGTCGGTGATACCTCCAAGTACATCTCCTTCTATGGACTGAGAACACACTCTGAAATGTATGGCACGCCTGTAACGGAGTTAGTGTATGTTCACAGCAAGATGATGATCGTTGATGATAATACAGTCATTATTGGATCAGCCAACATCAACGACCGTAGCTTGCTTGGAAGTAGGGATTCGGAAATAGCCGCCATTGTGAAGGACAGAGAATTTGTGTCGTCCGTAATGGATGCTAAGGAGTACAAAGCCGGACGCTTTGCCTTCAGCTTGAGATCAAGGTTATTCAGAGAGTACCTGGGTATGTTAGACTCAACGTCTGATGACGACATTAGGGATGTTGTATCCGACACTTTCTACAAGGACCTTTGGCAGGCGACAGCCAAGAAAAACACTGAAATTTATGACAAGGTGTTCCACTGTATCCCCACTGACCACGTGCGTTCCTTTGCTGATTTAAACACGTATAAGAGCCTCAAATCCCTTGCCAAAGAGGCCCCAGGCCAAGCTCGCGCTCGCCTGAGAGACGTCAGAGGGTACCTCGTGGAACTTCCCCTTCATTTCCTAGAGAACGAGGACCTTCGACCTCCTATCGGAAGTTCAGAATATATGGTCCCGGCGGAAGTTTTCACTTAA

Transcript

rna-XM_068879970.1

GGGTCTCATGGCCGCCGCCTGTGCgtgttttgtttactttcaagTTAATTCCACGCGCAACAGCTTCAGAAAGAAAACGGACTCAGTTATTTAAGGCGGTTCTGTTCCCCAAATCAATGGCGTCATTCATCACCGAAGAGATAATTTTCATTTGCATATAAGAGTCTCTCCATCTGGGATATTTTCACCAAGATATGTTTTTTGAACTTTGAAGTAATTTGACCAGCATTACCACAAAACATGGATATCTGCAAGTGAAGATATTCTTAGTTCCTTGTCACCACTATGAAACAACaggcagatcatatggaaacatCATCTTTTTCACAACCAGATGCTAATGCAAAATTGGAAGAGGAAATTTCAGTTGAGAAACCTCTGAGAGAAACTCCATCACTTACCAACCAGAGGACCTTTATAGATTCTAGATCTGGTTCAGTTTGTATCTATCTAGATGAAGACGAACATGACATTTCAGCCATTGGTGTTACTACTGTTCCTTGTGCTTctcaagaaacaaagaaacctGTGTTTATTCCTGGACTTAAAGTCACTGCCAAGATTATTGATGTTGAACGGGCACCAAGAACTCATCCATTTAACCCTAACCTATACACCATCAAACTTACTCATGGTAACTTCAACTGGGAAATCAGACGCCGTTACAAACACTTTATAAAACTTGATGCTGAACTGTTTCTCCACAGAATAAATGTGCCTCATCATGTTATTAGAGGACGGGCTGGAGAAATTCGGAATTTGCCAAGTAGACACTTGCCCAAGAGACCAGACATGTTTGCAACCACTCAAAACatggaaaagagaaaaaaatcccTTGAGAAGTATCTGCAGATTATTCTAGATAATTCTAACTATCTCCATCGCAAGGAGACACTAAGTTTCCTGGAAGTCAGCCACTTCTCCTTTCAGCACGAATTGGGTGAAAAAGGAAGGGAAGGTATACTGAGAAAGCGGTCTGGAGGACATCGGTTTCCAGCTGGTTGTTGTAGCTGTTGTTCTGGTTTGTCTTGGGGAATATGGAACAAGAGGTGGATCGTGGTGAAGGACAGTTTTATAGCTTATGTGAGCCCCAGAGATAAAGAAGTGAGAGGAGTGCTGCTAATGGACAAAGAATTTACATTTAAGCATGGAAGGAAGCAAACTGGTTTGCAAAATGGCTTGCTGGTTCAAAACCAGAGCAGAGAACTTCTTTTATCTTGTTGGACGGAAAGAAAAACAAGAGAATGGATGAAAGCAATCATTCACATGATGGCAACCAAAGGTGCTGAATGGACAAAAGATCATCCTCACTATTCATTTGCTCCTGTCAGGCAAAATGCTGCTGCTCAATGGTATGTGGATGGAGAGTCATATTTTGATGGAGTAGCAGATGCATTAGAAGCTGCAAACGAAGAAATCTATTTAGCTGGCTGGTGGATCAGCCCAGAGCTTTATCTTCGTCGACCAATCACTGCTGGCCATGAATGGAGACTGGACTGTATTCTCAAGAGAAAAGCAGAGGAAGGGGTGAAAATTTTCATTCTAGTTTACAAGGAAGTGGAATTTGCACTGGACATTGACAGTGCCTACACTAAAGCCAAACTTATGAGCTTGCATTCAAATATCAAGGTTTTACGGCACCCGGACCACATTACTGGGGCAGGTGTGATGCGATGGGCTCATCATGAAAAGTTGGTTGTTGTTGACCAAAAGGTTGCTTTTATTGGAGGACTTGATCTGTGTTTTGGTCGCTGGGATAACAGCTTTCATCCTCTGACTGACTTTGGATCCGTTGTCCCTCCTCAGGATATAAACAACACGGAAAAGGAGATAAGAAAAATCGGCGCCATGATTGTTGAGGGATCCATAAACGGACTGAAACTACCCACGTCTTCAGACTTGATGGCTGGTCTTGAAATTGAACCTGGTGCAAGAGGAGGAAGTAAGATGTGGCTGGGAAAAGATTACGCAAATCCAATCAACAAAGACTTTTGTGAACTGCGCAAACCTTATGAGGATTCTGTAGACCGAGGGACGGTTCCTCGCATGCCGTGGCATGATGTTGGAATGTGTATGTTTGATGCATCAGCGAGAGATGTGGCCCGACACTTCATCCTTAGGTGGAATGCGACGAAGTGTGGAAAGGTTAAAATGTATCCCGACATTCCTTTCCTGCTTCCAAAGTCGTACTCTGATCTTGTCACTGACAGGTCAGCGGCTTCGAACAGCACGAGTTCAGTGGATTGTCAGATTCTTCGTTCCTTGTGTGAGTGGTCGGGTGGTATTCCTGTGGAATGCTCTATCTATTCGGCTTACATCAAGGCAATAAAGGAAGCTGAACACTTCATTTATATTGAGAATCAGTTTTTTATTTCCTCTCTGTTCATCGACAACGTCAAGAATGAGATTTGCCAAAACCTTTTGTGGAGGATACTAAGAGCGCACAGAGAAGAAGAAAACTTTAAAGTCATCGTAGTCATGCCACTTTTGCCAGCATTTGAAGGGGAGATTGGAAAAGCCACTGGTCGGTCGACCGGCGTCattactcattggaattatCGCTCAATTTGCCGTGGCTCGCAGTCCTTGTTGGCAAGACTCGAAGAGCTtgTCGGTGATACCTCCAAGTACATCTCCTTCTATGGACTGAGAACACACTCTGAAATGTATGGCACGCCTGTAACGGAGTTAGTGTATGTTCACAGCAAGATGATGATCGTTGATGATAATACAGTCATTATTGGATCAGCCAACATCAACGACCGTAGCTTGCTTGGAAGTAGGGATTCGGAAATAGCCGCCATTGTGAAGGACAGAGAATTTGTGTCGTCCGTAATGGATGCTAAGGAGTACAAAGCCGGACGCTTTGCCTTCAGCTTGAGATCAAGGTTATTCAGAGAGTACCTGGGTATGTTAGACTCAACGTCTGATGACGACATTAGGGATGTTGTATCCGACACTTTCTACAAGGACCTTTGGCAGGCGACAGccaagaaaaacactgaaatttATGACAAGGTGTTCCACTGTATCCCCACTGACCACGTGCGTTCCTTTGCTGATTTAAACACGTATAAGAGCCTCAAATCCCTTGCCAAAGAGGCCCCAGGCCAAGCTCGCGCTCGCCTGAGAGACGTCAGAGGGTACCTCGTGGAACTTCCCCTTCATTTCCTAGAGAACGAGGACCTTCGACCTCCTATCGGAAGTTCAGAATATATGGTCCCGGCGGAAGTTTTCACTTAACCTGAAACAACCTGAAACTTGCATCTATGAAGTTTGGTTTGAACATCTTGGGCTGTGTTGAGAGCagagtttattttttttttttaatgtgtcagGTATACCTAGGGTAACTTTTTTCCGTGGAATACGGTAAGAAGCTTTACCTGGAATAGGTAACACCGCTCAGAAAATCCACTGGCACCCAGAGGAATCGATTTAAGAATTTAGGACTTGAAATATCCAAGAGAACGAGACAATTCATTTTATCAACATGTTTATCTGCGTTTCACAAGCTTTTACATTTAAAAGATCTAACGTACGTGGAATCCCTGCGCGTAAAGTATGTTATGCGTTTAACAAAAGTGTAAAATTATTACTTATAGTGGATCACAATTCAGCAGTACGGGGAGCTAGCATTGCTAAACTGGCTCAGCGGTAAGCTTAAAAGTTCCCgtaacgacaaaaaaaaaagcagatatGATAAACACCCGTCTAaaagaacctagaatttaaaAACGTGCTAGTTGATTAGGCTGATTTTCTTTTAAGACCGCCATTACATAAGAACTAGGTTAGCGTGAAAAATAAGTCAAGCGACTGGAACGAATTGCACTTTAAACTGCACAGATCTTgttcaaaacttatttttcatagTTATGAAATATAAAGGTATCAGCGTCCTCATCAGAGGAAATCAGTCATTCCATCATAGAGTAGATATATTTTTCGGAAATAAGAACGGAAATAAGAACCTACTGAGAATGCCTAAAACTACTGTAAATACCATTTTTAGaagaacctatttagcctaacttggaaaaatctaagttcttatatgcgggtgtttactgtacccCGCCGGATTGGCTGTGCTTTACCGTCGTGAGCCAGATCCCGGACTTCTATTACTCAAAGAAAAGGTCTGTTACTTCGGTGTTGGATTTTCAACACCCGAGCATTACAAACAAGACAGGAATCAAAGGGAGGGCTTTTGGTTTGGTCGATGTCGACACAATGGAATTACTATCGTACAATTCACTGGATATTTTTAAGTAATTtcgttttttacataaagcttGATTAAGTAGATATCTATGATAGATTTTCTAACTGATTGATTTATACGATTTCGGGAATACGGGTTTTTGCTGGTTTGGATAAATCCATTTCgtctattttgagaaaggttgtaaGAAAGCGCgagtttttaaacaattttttcgcAAGCGTTTCATTTACAAATTTCATGAGTAAAGCTTTCACTTTTGTCGAGAATTAATAATTGTAGTAAAGCTATTTATCAGAGGgcgttaaattatttttcttcctACGCAAGAGAAGTAAAAGGATTTTTTCCCCA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q13393	Phospholipase D1 OS=Homo sapiens OX=9606 GN=PLD1 PE=1 SV=1
O08684	Phospholipase D1 OS=Cricetulus griseus OX=10029 GN=PLD1 PE=2 SV=1
P70496	Phospholipase D1 OS=Rattus norvegicus OX=10116 GN=Pld1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001600 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13091 all species →	PLDc_2	PLD-like domain	Domain	Interproscan
PF00614 all species →	PLDc	Phospholipase D Active site motif	Family	Interproscan
PF00787 all species →	PX	PX domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016555 all species →	Family	Phospholipase D, eukaryotic type	Interproscan
IPR015679 all species →	Family	Phospholipase D family	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR001736 all species →	Domain	Phospholipase D/Transphosphatidylase	Interproscan
IPR001683 all species →	Domain	Phox homology	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR036871 all species →	Homologous_superfamily	PX domain superfamily	Interproscan
IPR025202 all species →	Domain	Phospholipase D-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18896 all species →	PHOSPHOLIPASE D	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004630 all species →	Molecular Function	phospholipase D activity	Interproscan
GO:0006654 all species →	Biological Process	phosphatidic acid biosynthetic process	Interproscan
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan
GO:0009395 all species →	Biological Process	phospholipid catabolic process	Interproscan
GO:0043231 all species →	Cellular Component	intracellular membrane-bounded organelle	Interproscan
GO:0060627 all species →	Biological Process	regulation of vesicle-mediated transport	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0035091 all species →	Molecular Function	phosphatidylinositol binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01115	PLD1_2; phospholipase D1/2	EC:3.1.4.4	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068736071.1 across 36 RNA-seq samples of Montipora capricornis. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

0TPM > 0

1Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.