Gene detail

Detailed information of XP_068736294.1 in Montipora capricornis

Genomic Location: chr14:23844458...23863526
NR annotation: XP_029207177.1, E3 SUMO-protein ligase NSE2-like [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_068880193.1

CTTTGAAATCGTCTTCACTAAAACATAAAAATAGTGCAACATGCCTGCCCATTTTAGAGCTGTGGATAACGCTGTCGAGAAAGTTACAAAGGTAAAGGAATATGTAGACAATGGTATAAGTGTTACTCTTGATGTGGCCCTGGATTTGGAAGAGGTTTGCAAGGATAGCGAGCAAATCAAAGAACTGGAAGACACCATGGTTCAGTACATCGCAATGGAACGAGAAATGGATCAGTGGGTGAAAGCAGTGGAACTTGCAAAGACGGACTTCAATCGGCAATATAATGCATCTAGTGATGACATCCCAAATATTGAGGAGATCTTCAAAGAAAAACTTGGCTCTCTAGAAGCTGGAAATACAGATTCTGACTTAGAGAGCCACCTgaaagttaaagaatttagagCAAAAGTATGGAATATTCACCATGAAGGCCAACCTTTGCCAAGTGCAAATACACAGCCGCTTGAAGATGAAGACATTATAATGTCACAGGTGCCTGAGGTTCAAACCAAATGCCCCATAACATTAAAGGAGATGGTGAAGCCAATGAAGAGTAAAGTTTGCGGTCATAGCTATGAGCACGATGCCATTATGCACCACATTGACAGTCGAGCTCGCAGTCGAGCAAAGTGTCCTGTCTGTGGGCAGCAGATCACCAAAAATGACTTGGAACACAATACAGTGTTGGAACATGATATTAAAAGGAAACAGAGAAGAAAGTGAGAATCTTATAATTTATAAAACTTATAACTTTTATAAACATTACTGTATAGCAATTGCTGTTTAGAAATTAGTTATTTAGTTTTGACGTCATGAAGCAGTGTTTTAAATAGCAGCCCTAAAGTTACTTTTGCAAGCATatgttacatgtagtttttcgCCAAAAAATTAAAGACGGGATTAGTTGCCATCTCTTCAAAATCTCCCACATATTGCCTGAGATTGGCCCTCCTATTTTATTTGAGAGCCTATCTCACGCATTTCTTTGGGCCGAGGTGATTCCAGTGTGAACAGGAGATCTGTGATTTGAAGATAAATTGCTCTCCGATACCTTAGAACTATCCAACGTGGACACAGTTTTCAAAATCCAGATTAAACTAACTCTGGGTTAGACTAGTCGAAAATTTAATTGAAGTTTATTTTACCGATCAAGGAGTATATTTTCCGCACGATTTTTGCTCTTCACTTTTGGCTTCGACTTAACCTTTTCTTTACTATCCACATGTACATCAAATTACACTATTGAAGCATTTTCAATGGGCAAAATTGAATGTTCGATTGATATTTAAGTGCAGGTTAGACTTAATCAGGTTTCAAGTAGACCTGACTTACACTGCTGTCACTTCCACTTCGGTAGATAATTGTCAGTATTATTAATCACGGTCGTTTTCGTGGTACAGACTAGTTCATGATCTCACTGCTTTTGGGTTAATCTTCTATTTCTGACACAAAAAGCTTGCAAATAATAATtggccacttcagaaaataccataatactctttgttttcccCCCAAGATTTtccatgagcattgtttttgttttctcttgggaccattcgAAGGGGGTCTTTACATGAGACGGGACCCCCtttcgcggatttggacccccctgaaaataagcattttttttattagtATATGTAATTTCTCATGGGCTCGAGGGCGATTAAGtattaatttcacgcgtattcgcgactcgggcaattttgtcaaaactttgaaaacacaagtgaaatCAATCCTTAACtgcacgagggcacattgcgattacgtgtttatcaTGCACAcgaagggcaaaattattgtgGGAAGCCGGTTCAGTGCATATTGTGTTTTGAGttgcaaaaaaggcaaaatgaaaatattaggtagtttttttcttttcaaatgatCTTTATTACTCAGTGTAAAAAAAGAACCTACAACACATTTTGAAAACCAATCTTTCTCAACAATAACTTACAATACTTTTCTATGCTTTAACTAATTTAAAGCGAGTTTTTAACAAGCTATATTTACAACTTGGTTGTATAATTTGATCTCAGTTGAACAGTTACAAACGGAATGATTACTATACTCACTCTTGCGAGGGACACTTTAAGAACTTTTTGTGTAAGCGAAGTTTATTGGTCAAAATTAAACTGTTCATTCTTTTGTGTTATA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7ZXH2	E3 SUMO-protein ligase NSE2 OS=Xenopus laevis OX=8355 GN=nsmce2 PE=2 SV=1
Q96MF7	E3 SUMO-protein ligase NSE2 OS=Homo sapiens OX=9606 GN=NSMCE2 PE=1 SV=2
Q32KY9	E3 SUMO-protein ligase NSE2 OS=Bos taurus OX=9913 GN=NSMCE2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002550 (this species only) · gene tree & orthology
Ubiquitin family	E3\|E3 activity RING\|U-box · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11789 all species →	zf-Nse	Zinc-finger of the MIZ type in Nse subunit	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004181 all species →	Domain	Zinc finger, MIZ-type	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR026846 all species →	Family	E3 SUMO-protein ligase Nse2 (Mms21)	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21330 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0000724 all species →	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0016925 all species →	Biological Process	protein sumoylation	Interproscan
GO:0019789 all species →	Molecular Function	SUMO transferase activity	Interproscan
GO:0030915 all species →	Cellular Component	Smc5-Smc6 complex	Interproscan
GO:0061665 all species →	Molecular Function	SUMO ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22756	NSMCE2, NSE2; E3 SUMO-protein ligase NSE2	EC:2.3.2.-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068736294.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

28TPM > 0

1Conditions

51.8Max TPM

23.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	28	22.95	51.78

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	51.78
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	50.70
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	48.41
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	40.85
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	38.55
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	38.21
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	37.57
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	37.56
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	35.26
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	29.61
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	29.43
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	28.35
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	27.39
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	26.11
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	25.58
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	25.46
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	25.29
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	24.90
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	23.95
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	23.90
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	23.77
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	22.24
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	19.87
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	19.58
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	19.26
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	18.91
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	17.38
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	16.54
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.