Gene detail

Detailed information of XP_068736485.1 in Montipora capricornis

Genomic Location: chr2:2700187...2704764
NR annotation: XP_029209361.2, serine/threonine-protein kinase rio2-like [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9BVS4	Serine/threonine-protein kinase RIO2 OS=Homo sapiens OX=9606 GN=RIOK2 PE=1 SV=2
Q9CQS5	Serine/threonine-protein kinase RIO2 OS=Mus musculus OX=10090 GN=Riok2 PE=1 SV=1
Q54T05	Serine/threonine-protein kinase rio2 OS=Dictyostelium discoideum OX=44689 GN=rio2 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005987 (this species only)

Pfam domain

No Pfam domain signature was detected for XP_068736485.1. This gene does have a gene model — the search simply returned no hit.

InterPro

No InterPro signature was detected for XP_068736485.1. This gene does have a gene model — the search simply returned no hit.

PANTHER

PANTHER term	Description	Source
PTHR45852 all species →	SER/THR-PROTEIN KINASE RIO2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0030490 all species →	Biological Process	maturation of SSU-rRNA	Interproscan
GO:0030688 all species →	Cellular Component	preribosome, small subunit precursor	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_068736485.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068736485.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

29TPM > 0

1Conditions

28.4Max TPM

8.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	29	8.19	28.35

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	28.35
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	20.52
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	19.42
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	19.42
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	14.76
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	14.23
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	13.95
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	13.72
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	13.00
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	12.98
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	11.83
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	11.59
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	11.23
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	10.59
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	10.52
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	10.25
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	10.14
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	9.09
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	8.83
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	6.81
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	4.66
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	4.42
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	2.65
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	2.52
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	2.21
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	2.09
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	1.93
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	1.86
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	1.38
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.