Gene detail

Detailed information of XP_068737572.1 in Montipora capricornis

Genomic Location: chr14:30239677...30245905
NR annotation: XP_029179840.1, cytochrome b-c1 complex subunit 7-like [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9D855	Cytochrome b-c1 complex subunit 7 OS=Mus musculus OX=10090 GN=Uqcrb PE=1 SV=3
Q5RC24	Cytochrome b-c1 complex subunit 7 OS=Pongo abelii OX=9601 GN=UQCRB PE=3 SV=3
P14927	Cytochrome b-c1 complex subunit 7 OS=Homo sapiens OX=9606 GN=UQCRB PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008374 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02271 all species →	UCR_14kD	Ubiquinol-cytochrome C reductase complex 14kD subunit	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036544 all species →	Homologous_superfamily	Cytochrome b-c1 complex subunit 7 superfamily	Interproscan
IPR003197 all species →	Family	Cytochrome b-c1 complex subunit 7	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12022 all species →	UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KD PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005750 all species →	Cellular Component	obsolete mitochondrial respiratory chain complex III	Interproscan
GO:0006122 all species →	Biological Process	mitochondrial electron transport, ubiquinol to cytochrome c	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00417	QCR7, UQCRB; ubiquinol-cytochrome c reductase subunit 7	-	Non-alcoholic fatty liver disease	ko04932	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068737572.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

29TPM > 0

1Conditions

507.0Max TPM

232.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	29	232.93	506.98

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	506.98
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	500.52
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	493.50
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	468.90
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	320.57
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	319.24
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	317.21
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	309.69
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	309.21
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	308.96
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	301.71
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	299.16
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	294.52
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	277.18
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	256.70
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	255.40
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	252.00
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	243.97
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	243.58
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	243.09
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	241.52
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	229.51
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	226.73
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	225.87
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	216.36
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	215.40
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	171.22
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	169.17
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	167.50
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.