Gene detail

Detailed information of XP_068737574.1 in Montipora capricornis

Genomic Location: chr14:30609673...30612979
NR annotation: CAH3174673.1, unnamed protein product [Porites evermanni]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P50238	Cysteine-rich protein 1 OS=Homo sapiens OX=9606 GN=CRIP1 PE=1 SV=3
P63254	Cysteine-rich protein 1 OS=Mus musculus OX=10090 GN=Crip1 PE=1 SV=2
P63255	Cysteine-rich protein 1 OS=Rattus norvegicus OX=10116 GN=Crip1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001125 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00412 all species →	LIM	LIM domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001781 all species →	Domain	Zinc finger, LIM-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46074 all species →	CYSTEINE-RICH PROTEIN CRIP FAMILY MEMBER	Interproscan

Gene Ontology

No Gene Ontology signature was detected for XP_068737574.1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24412	CRIP1, CRP1; cysteine-rich protein 1	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068737574.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

28TPM > 0

1Conditions

320.0Max TPM

37.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	28	37.23	319.99

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	319.99
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	70.51
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	68.71
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	67.67
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	63.13
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	60.19
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	59.17
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	58.53
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	57.04
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	56.30
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	55.60
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	47.35
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	40.34
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	40.27
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	28.34
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	27.27
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	26.44
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	25.14
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	22.74
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	22.70
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	20.09
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	18.51
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	17.07
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	15.86
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	15.42
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	14.85
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	10.81
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	10.12
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.