Gene detail

Detailed information of XP_068738892.1 in Montipora capricornis

Genomic Location: scaffold_496:32841...60073
NR annotation: XP_029211130.2, lambda-crystallin-like isoform X1 [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_068882791.1

AACAGAAATATTACGTCGTCATTGTTCCTGAAGTGTAAGAAAGGGAAAGTTTCTTGGTACCGGACCCGACATTGACGCTGAACGGGGCTTGTTTGTTGTCAGTTATTATAGGATGACTTCTCCACTTCCCAGCAAAGGAAAAGTGGCAATTATTGGCAGTGGATTGATTGGAAGATGTTGGTCAGTGATATTTTCCAGTGCTGGTTACCATGTTGCATTGTATGACAATGTTGCTAGTCAGATCCCTGCAGCACTTTCCAGTATTGAAGCTCAGCTTTGTGATATGGAAGCCAAGGGATTGATGCGAAGCAAAAACGTTACTGCTAAGGAAGCGTTTCAACTAGTTGTCAGTGTTGATGACCTTCAGACAGCAGTAGATGGAGCTCTTTATATCCAGgAATGCACCCCAGAAAATCTCGAATTAAAGAAGAAGGTCTTTGACAGCCTCGACAACTGCATTACATCTTGTGAGACCATATTGGCAAGCTCTACGTCCTGTATTGTGCCCTCAAAATTCACTGAATCTTTGAAGCATCGTGACCAATGTATTGTAGCCCATCCAATTAACCCTCCATATTATGTACCACTGGTGGAGGTTGTACCTGCACCATGGACAGACAGTAAAACCATAGATGAGACAGTTGcaataatgaaagaaattggACAGTCACCTGTAGTTATGAAGAAGGAAGTCAATGGATTCCTTTTGAATCGTTTGCAATATGCTGTAATCATGGAGGCCTGGAGACTAGTTGAGGATGGTGTTTGTTCTGCAGAAGACGTTGAAATCACTATGACTGAAGGTCTTGGACTGCGTTACTCTCTGCTGGGTCCCTTTGAAACCATGCAGCTGAATGCAAATGGAATCAGAGATTACTGTGAGAGATATGGAGCCAAcattgaaaatgtttgtaaggAGCAGGGCGGACCACGTTCGCTGGGCGGCGATACATTAGACAAACTTGAGAAAGAACTTGGGAAAACAATGCCCTTAGATCAACTGGACAAGAGAAGGGAGTTAAGAGATCGACGTCTTGCAGCATTAGCCATTCACAGAcgtcaagaaaaagaagaaaattaatgtttttcgGTGCAGTAATAGTTACGCCTGTTAATCGATGTTAAAATTTGTATAATTCAATTTGTAAACAACATTCTTGTAGTAGTGAATCGGTGTCTGCCTTAGTTGCCACGTCAATTTAAGTAATCATTTCAACTCGGCCAAAGGATAATTCACCGCAATGCAGGAGTCTCTTGATTGACAAACAATGACCTGTTTTTACGTCACGCAAATGAGATTTAATTGTCATTCcgatttttttctaaatgaGGCTACGTCGATCACTGCTTGACTCCGCCCTTGACGGAATATGTTTACGTTTATAAGACCGTAACGTCGTCTTAAAATCGAATTTAGTTTACATTGTTGTTGTATTGGTTTGCTTCAAATTTatgtcggaaaaaaaaaagaatggacCAATTCAGCTGTTTAGGAAAAAAGGCTGATTATCgcaaattttcttttatataCAGCATATATTTCATGGGCACTTCCGTGTTGGATTTAATGAACTCCTTCTGCCTCTGGCTGTTGTTTCATGTAAAAGAAGCTCAAGGCCCAAACAATAGAGACAACTGTAACGTGCAGTCAGATCCAACATGGCGACGCCCAGGCAATAGCGGTATTCAATTTTTTCTTCTGAAGATACAGACTCTTTGCTTTTTAACGTCATTCATTAATTGTCAATGACACAACTAGTGTGGTTCCAATTAAACCCAAAATCTGAAAACTCCGGCCAATCACTATGGACAAATCGGTACAAAGGGCGGAAAAGTCTGTAATAGTTGGTTTTGGTTGTTTGTCCGATTTTAAGCCAGTCACCACGGCGTAGCAAAAACCAAACCCATCGTCAAAACGTCCGATGAGGCATAATCAATTAATTGAgcattcaaaatacaaattccACTGGCCGTGTTAGATGGTGTTTTTCAAGAGACGGTTGCTAAAAATGTGTCTGCTGTGTCTAATTTAGAGATAACTAGTCCATCTTAAAGAGAGTTTAATTGCCGATTCGATCGGAACCAGCCAGTCCTTCAGAAGAGGTGTTCGCCTTACATTGACGTCCGCTTAGGGCAGTTGAATGTAACTCGGACAGGACTCCAAGAGAGAGCAAGAATGAACAGGCAAAGAGCTAGCGAAGAGGATCGCCAGTGGGAGCGAGTTAGGGATAGAGCGTGGAGGCAAAGTTGTGGCGAAGAGCGTCGTGAAGCGGAGCGGGAAAGAGGCAGACATAGGAGGCAAAATTGTAGCGAAGACTGTCGCCAAGCGGAACGAGAGAGGCCTAGAATAAACAGACAAAGGCAACGTGAAAGAGAACTTCAGAGGCGGAGGGAAaggaagcaaaacaacaacttgtttACAGAAGGTAAGTCCACAGGTCGATCACTCTGTCGGTGTTGTTGTTATCGATTCGTAGAAGGATAAATACAGACGAATATTACGGCGGTGGCGATTTgctcggcaataaagtttgaaagcaaataagtcaataaaagatcaaacaaagtgtcaaCTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P14755	Lambda-crystallin OS=Oryctolagus cuniculus OX=9986 GN=CRYL1 PE=1 SV=3
Q811X6	Lambda-crystallin homolog OS=Rattus norvegicus OX=10116 GN=Cryl1 PE=1 SV=3
Q99KP3	Lambda-crystallin homolog OS=Mus musculus OX=10090 GN=Cryl1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004239 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02737 all species →	3HCDH_N	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain	Domain	Interproscan
PF00725 all species →	3HCDH	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006176 all species →	Domain	3-hydroxyacyl-CoA dehydrogenase, NAD binding	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR013328 all species →	Homologous_superfamily	6-phosphogluconate dehydrogenase, domain 2	Interproscan
IPR022694 all species →	Family	3-hydroxyacyl-CoA dehydrogenase	Interproscan
IPR008927 all species →	Homologous_superfamily	6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily	Interproscan
IPR006108 all species →	Domain	3-hydroxyacyl-CoA dehydrogenase, C-terminal	Interproscan
IPR006180 all species →	Conserved_site	3-hydroxyacyl-CoA dehydrogenase, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48075 all species →	3-HYDROXYACYL-COA DEHYDROGENASE FAMILY PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006631 all species →	Biological Process	fatty acid metabolic process	Interproscan
GO:0070403 all species →	Molecular Function	NAD+ binding	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0050104 all species →	Molecular Function	L-gulonate 3-dehydrogenase activity	Interproscan
GO:0016616 all species →	Molecular Function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13247	CRYL1; L-gulonate 3-dehydrogenase	EC:1.1.1.45	Pentose and glucuronate interconversions	ko00040	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.