Gene detail

Detailed information of XP_068739908.1 in Montipora capricornis

Genomic Location: chr1:29479930...29497200
NR annotation: XP_029207261.2, allantoinase, mitochondrial-like [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_068883807.1

CTCTTCGTGTGATGGCTTGAGCAAGAATGGCAGACGGGGAAGACGTTTTGGTTATCAAAGGACAAAGAATAGTGCTCCCAGACTCCATTATTTCAGGATGTGTAGTCGTGAAAAACGGACAAATTGTAGGTATCGAAGCTGGATATAGTGCCATCTCAGCGCCATTGGGAGCAAAGGTCTTAGACGCAGAAAATCTTGTTGTTATGCCTGGAGTGGTTGACAGTCACGTCCATGTTAATGAACCTGGAAGAACGGAGTGGGAAGGATTTGCAACAGCAACGCAAGCTGCTGCTGCAGGTGGAATTACTACTATTGTAGATATGCCTTTGAATTCCATTCCACCTACCACCACTATGGATGGTTTTAACACCAAGCTGAATTGTGCAAGGAACAAGTGTTGGACAGATGTTGCCTTTTGGGGCGGAGTGATACCGGGAAATCAGGCTGAAATTAAGCCCATGGTCAGTGCAGGCATCAAGGGATTCAAGTGTTTTCTTGTGCACAGTGGTGTGGATGAATTTCCATGTGTTACAGAAAATGACGTGAGGTTGGCAATGATGCAAATGCAAGGAACAGATGCAGTGTTCCTGTTCCATGCAGAAGTTGAGTTGCCTCAGGGACCACCCATCACAAGTCAGGATCCCTCGAAGTATTCTACTTTTCTGGAATCACGACCAGAAAGCATGGAAAACCAAGCTATTGAAATGGTGATCAAGCTATGCAGAGAATACAGGGTACCTTGTCACATAGTACACCTTTCTTCAGCCAGTGCTTTGCCCATGATTCGCCGGGCCCGTGCAGATGGGGTCCCTCTGACTATAGAAACTACTCATCACTATCTGTCTCTCACAGCTGAGGACGTGCCTGAAGGGGCTACTCAGTATAAATGTTGCCCACCAGTAAGAGATTGCAAGAACCGGGACTCTTTATGGGATGCTCTAAAGTCACGTGACATTGACTTGGTAATCTCGGACCATTCTCCTTGCACAGTGGATTTGAAATGTTTGGAAAAAGGAGATTTCATGGCGGCCTGGGGAGGAATATCTGGAGTTCAGTACGGTTTGTCCATTTTCTGGTCAAATGCATGCCGTCGTGGTTTCACCCTTCATGATGTTGTTCGTGTGTTGTGTGAAGAGCCAGCCAAGCTGAGTCGCTTGAGCCATCGCAAAGGAAAAATTGCAGTTGGAATGGATGCAGATCTTGTGCTTTGGAATCCTGATGAATcttttgtgGTTGACCAGAAAAATACTCGACATAGGAACAAGGTAACACCGTATCATAACATGGAACTAAAGGGAGTGGTACACAAGACCATCTTACGAGGAAACTTGGTGTATGAACGCGATAGAGTGTGTGATCATCCTGCGGGACAATTGCTTCTCGAAACGGGACAAGGAAGCCCGACTTCGAAAATTTGATATAAGGATGGCCTCTGATACTGCCTAAATCTTAGTACTGCTGCTTACTATGCCATTTTGCTAATTATGGTAATTTCTTAGTGAATCCTGAGTCGTTCCAGTCCTTTGTGGGGTAAACTTCTTTTTGAGCGGTtcctttgaaattacaattttgtCCGTTTGGCCCAACAAGGGACTGGAACGACCCATGATTTACAAGCAACTTACCATAAGCAAAATGATTTACAAACTATGAACTCTTGAATATTCGATATGTACATTAGTTGTCAAGGGTCAACATCATTTGTGACAGGAAACGATCTTCTTTTGCTGTTttaatttcctttgaaaatggGGAATTACTTAATACAACAGACCCCAGTTGATCAAAGATCGGATAACTTTATGGcggtggataagtcaccatCCAACAGTTTCAACCTGTGCAAAAACCAAGATATTTGCTCGCCTAACTGTGAATGTGCCAACCTCGTTCCAGAGTCTTTcgtctctgcctcctttgtccaCACAATGgcggcagagaagagagaccctgcgCCGGAACGATGTTGTGAATATGCATTCTCTTCTCACATCTAAGTAAAAGCGTACTCGAAGACCTTTGTCAATGTGCAACGCGAAGTATATTTTACACTCTGCATAGCGACTTATCCAGGCTTTGCAGTTTGAACAACTGCTTGGATAAACTGTATACTAAATACCAATCACATCAGGGGGGTGAAATTAATTAGTTTGTTGCTTGATATACAAGGCGtggtgtttctttttcttcccccAAGTCAGTTTTGCACGAAGAGGGAACAATTTCAAGAGAAGCTCAGGTGTGTGTAAACGTTGATTAAGCACGATTTCTTTCAACGATTTTATATTTGTGAAAACTTGGATAACTAGTGTTTAGTACTTGTGGACGAGTCAATCCTCCACTTGGACacaataggaaatacaagtccaATAATaacctaattagtatggatcgaaagcttaactatcctagatttgtactatgcaaaaagccgcatgaaaaaagacgtattagaagagaaataacattttttttccaaaagtgtcgaaaatgaccatttttcgcaaaatagcaaagggttGAGTAaggggaaattttcaaaaacggccgattttttggtcgataACGAACAGGCAATTTTCGAAATACCAAATATTTAGCTTAATAGTgagcacaaaacaatagaaacacgttgaaatgaatgtgaaaaa

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P40757	Allantoinase, mitochondrial OS=Aquarana catesbeiana OX=8400 GN=ALN PE=1 SV=1
Q54SV3	Probable allantoinase 1 OS=Dictyostelium discoideum OX=44689 GN=allB1 PE=3 SV=1
Q9RKU5	Allantoinase OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) OX=100226 GN=allB PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009643 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01979 all species →	Amidohydro_1	Amidohydrolase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050138 all species →	Family	Dihydroorotase/Allantoinase Hydrolase	Interproscan
IPR002195 all species →	Conserved_site	Dihydroorotase, conserved site	Interproscan
IPR017593 all species →	Family	Allantoinase	Interproscan
IPR032466 all species →	Homologous_superfamily	Metal-dependent hydrolase	Interproscan
IPR011059 all species →	Homologous_superfamily	Metal-dependent hydrolase, composite domain superfamily	Interproscan
IPR006680 all species →	Domain	Amidohydrolase-related	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43668 all species →	ALLANTOINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004038 all species →	Molecular Function	allantoinase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006145 all species →	Biological Process	purine nucleobase catabolic process	Interproscan
GO:0016812 all species →	Molecular Function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides	Interproscan
GO:0000256 all species →	Biological Process	allantoin catabolic process	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0050897 all species →	Molecular Function	cobalt ion binding	Interproscan
GO:0016810 all species →	Molecular Function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01466	allB; allantoinase	EC:3.5.2.5	Purine metabolism	ko00230	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068739908.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

28TPM > 0

1Conditions

29.8Max TPM

13.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	28	13.82	29.76

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	29.76
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	26.71
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	26.27
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	25.30
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	24.71
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	24.54
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	23.54
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	23.51
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	23.46
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	23.41
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	23.04
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	21.00
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	19.93
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	19.40
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	18.44
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	16.58
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	16.33
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	15.35
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	14.75
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	12.52
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	12.21
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	11.96
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	11.20
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	9.73
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	6.53
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	5.96
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	5.82
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	5.71
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.