Gene detail

Detailed information of XP_068739991.1 in Montipora capricornis

Genomic Location: chr2:48297905...48301276
NR annotation: XP_020628973.1, acyl-coenzyme A amino acid N-acyltransferase 1-like [Orbicella faveolata]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BWN8	Peroxisomal succinyl-coenzyme A thioesterase OS=Mus musculus OX=10090 GN=Acot4 PE=1 SV=1
Q8N9L9	Peroxisomal succinyl-coenzyme A thioesterase OS=Homo sapiens OX=9606 GN=ACOT4 PE=1 SV=2
Q8BGG9	Acyl-coenzyme A amino acid N-acyltransferase 2 OS=Mus musculus OX=10090 GN=Acnat2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000673 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08840 all species →	BAAT_C	BAAT / Acyl-CoA thioester hydrolase C terminal	Domain	Interproscan
PF04775 all species →	Bile_Hydr_Trans	Acyl-CoA thioester hydrolase/BAAT N-terminal region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016662 all species →	Family	Acyl-CoA thioesterase, long chain	Interproscan
IPR029058 all species →	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan
IPR014940 all species →	Domain	BAAT/Acyl-CoA thioester hydrolase C-terminal	Interproscan
IPR042490 all species →	Homologous_superfamily	Acyl-CoA thioester hydrolase/BAAT, N-terminal	Interproscan
IPR006862 all species →	Domain	Acyl-CoA thioester hydrolase/bile acid-CoA amino acid N-acetyltransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10824 all species →	ACYL-COENZYME A THIOESTERASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006637 all species →	Biological Process	acyl-CoA metabolic process	Interproscan
GO:0016790 all species →	Molecular Function	thiolester hydrolase activity	Interproscan
GO:0006631 all species →	Biological Process	fatty acid metabolic process	Interproscan
GO:0047617 all species →	Molecular Function	fatty acyl-CoA hydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01068	ACOT1_2_4; acyl-coenzyme A thioesterase 1/2/4	EC:3.1.2.2	Lipid biosynthesis proteins	ko01004	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068739991.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

27TPM > 0

1Conditions

14.8Max TPM

6.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	27	6.12	14.80

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	14.80
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	14.77
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	14.59
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	13.46
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	13.43
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	12.92
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	12.06
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	11.78
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	10.30
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	9.82
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	9.08
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	7.70
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	7.34
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	6.84
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	6.54
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	6.21
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	5.33
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	5.19
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	5.07
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	5.01
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	4.96
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	4.88
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	4.55
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	4.18
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	3.73
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	3.07
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	2.61
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.