Gene detail

Detailed information of XP_068741028.1 in Montipora capricornis

Genomic Location: chr2:12032743...12039644
NR annotation: XP_029197681.1, cytochrome c oxidase subunit 5A, mitochondrial-like [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B0VYY5	Cytochrome c oxidase subunit 5A, mitochondrial OS=Notamacropus parma OX=413582 GN=COX5A PE=2 SV=1
P11240	Cytochrome c oxidase subunit 5A, mitochondrial OS=Rattus norvegicus OX=10116 GN=Cox5a PE=1 SV=1
B0VYX9	Cytochrome c oxidase subunit 5A, mitochondrial OS=Cebuella pygmaea OX=9493 GN=COX5A PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008899 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02284 all species →	COX5A	Cytochrome c oxidase subunit Va	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036545 all species →	Homologous_superfamily	Cytochrome c oxidase, subunit Va/VI superfamily	Interproscan
IPR003204 all species →	Family	Cytochrome c oxidase, subunit Va/VI	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14200 all species →	CYTOCHROME C OXIDASE POLYPEPTIDE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005743 all species →	Cellular Component	mitochondrial inner membrane	Interproscan
GO:0005751 all species →	Cellular Component	obsolete mitochondrial respiratory chain complex IV	Interproscan
GO:0006123 all species →	Biological Process	mitochondrial electron transport, cytochrome c to oxygen	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02264	COX5A; cytochrome c oxidase subunit 5a	-	Non-alcoholic fatty liver disease	ko04932	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068741028.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

30TPM > 0

1Conditions

811.4Max TPM

445.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	30	445.68	811.44

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	811.44
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	782.92
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	776.96
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	775.65
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	770.76
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	725.70
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	717.62
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	629.78
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	607.48
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	604.15
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	600.29
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	593.07
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	561.30
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	547.17
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	527.93
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	526.17
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	522.29
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	513.45
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	508.02
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	477.67
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	429.61
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	426.42
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	396.35
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	378.40
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	344.43
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	337.05
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	319.22
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	299.86
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	267.03
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	266.16
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.