Gene detail

Detailed information of XP_068741034.1 in Montipora capricornis

Genomic Location: chr2:12076945...12077890
NR annotation: CAH3160028.1, unnamed protein product [Porites lobata]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B1WB17	Partner of Y14 and mago OS=Xenopus tropicalis OX=8364 GN=pym1 PE=2 SV=1
Q8CHP5	Partner of Y14 and mago OS=Mus musculus OX=10090 GN=Pym1 PE=1 SV=2
Q640E9	Partner of Y14 and mago OS=Xenopus laevis OX=8355 GN=pym1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009080 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09282 all species →	Mago-bind	Mago binding	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036348 all species →	Homologous_superfamily	WIBG, N-terminal domain superfamily	Interproscan
IPR039333 all species →	Family	Partner of Y14 and mago	Interproscan
IPR015362 all species →	Domain	WIBG, Mago-binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22959 all species →	PYM PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0035145 all species →	Cellular Component	exon-exon junction complex	Interproscan
GO:1903259 all species →	Biological Process	exon-exon junction complex disassembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14294	WIBG, PYM; partner of Y14 and mago	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068741034.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

28TPM > 0

1Conditions

56.4Max TPM

28.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	28	28.94	56.42

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	56.42
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	50.24
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	46.22
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	45.80
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	45.23
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	44.69
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	44.20
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	43.92
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	43.78
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	40.25
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	39.97
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	39.85
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	39.46
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	36.36
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	36.34
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	35.87
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	34.77
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	34.49
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	33.48
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	33.18
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	32.56
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	30.78
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	30.72
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	29.95
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	28.06
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	27.43
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	26.75
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	11.04
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.