Gene detail

Detailed information of XP_068742736.1 in Montipora capricornis

Genomic Location: chr3:21840423...21860887
NR annotation: XP_029203804.2, LOW QUALITY PROTEIN: alpha-dioxygenase 2-like [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC138040910

ATGAGCGAAGCACAACAACTCTTCCTCAAACTCTCTCAGTTTGTTCACAATCTCCTTCAACAACTGCCCCATTGGTGGAACCTACCGATTGTCTTGATGCTGTTTTACCAGTTTCAACAGCGGAATTACCTGATGAGAAATAATCTTTTCGATAGCTACCCGTGTAATTTTTCTGGACCTAAATACGCCTGCCAGGACCCAGTTGTAGGTCACGTGTCTTTGGGTTGTTTCGTCAACAACAAGAATATACCATTTCCATATCTCTTCAAGAAAAATGGAATAACTAAAGAACAGTGCGTGCAGCATTGTAAAGAGATTAACTATCCGTACGCAGGATTCAACCAATGCGGGAAATGTTTCTGTGGAGAGAATCTCTTCATGCTGAAACGCTGCAAAAAACGACCCCGAAGATTTAAGCCGCGCTGCGGGACCTCTTCTCCTCCGACTGAAGTGTTTAGAACGATGTACTGCACAGAGAGAATGAAAAATGCAAGATCCCACGATGGAACCTGCAACGACTTGAATCAACCAGCCTCTGGAAGTCGGTTTTATCGGTTTGGGCGGAATGTAAATCGCACTAAGACGTTTGAGGACAAAGATCTTTTGGAACCATGCCCTCGAGAATTAAGCAGAAGACTTTTGACCAGAGAAGAATTTATTCCTGTCAAGCAACTAAACCTGTTTGCCGCCGCCTGGATCCAGTTTAACGTTCATGATTGGTTTGACCATGGCTCGGCAGATACCAGTCGCCGAATCAAGATAAAATTGAATCGAGATAATGATCCTGTTTACAAAGAGCATCGTGGGTGGATGAAAATTGCACGAACAAAGTCAGACAACTGTCGAAAGTTCTCGGACAAAGGCTCCCCAAAAACGTTCCAGAATGACGTGACACACTGGTGGGATGGTTCACAGTTGTATGGCAGCGACGAAGAAACAAATGCCAAGGTGCGAAGCTTTAAAGAAGGTAAACTGAAACTTGGTGAAGATGGCTTGCTTCCTGTTGATCCCAAAACTGGAATCGACATAACTGGTTTCAGCAAAAACTGGTGGGTTGGTTTAAGCCTCATGCATAATATATTTACCCGAGAACATAATACAATCTGTGATATGCTCAAAAGATATTATCCTGAATGGTCAGACCAGCAGTTATATGACAAAGCAAGGTTGATCAACGTTGCAGTCATCCTGAAAATTCACTCCATAGAATGGACCCCAGCAGTTTTAAACAACACTGCTTTGCGCGCTGGGCTCCGCTTGAACTTTGGCCTCAGTCCAGGCAAGGAAGTCTACGATTGGTTAAAGGCCCATAACATTAGTGTCCATTCAAGTGGAGCAGTTCTGACGTCGATTGTTGGCAAACCGAGTGAATTCCATGGCGTTCCATTCTCGCTAACAGAGGAGTTCGTTTCAGTCTACCGTATGCATCCTCTACTTCCAGATTATCTCCATATTGGCTCTTTTTCAGCAGGTCAAGGCACTGGTAGAACCTATCAGCTGCCAGAATATTCTTTCAGGGGAACTAGGGACGTTTTAGTGAACAACAGAATGGAAGATATCTTGTTTACGTTTGGTGTTGAACATCCTGGAGCACTGACTCTTCATAACTATCCAACGCACCTCATGAATTTGAAGCTACCAAACCATCAACAAAAGGGAGAGACTATTGACCTGGCAACTATCGAAATCTTGCGTGATCGAGAACGAGGCATCCCGCGATATAACGACTTCAGGAGGTTGACGAATCTCCGCCCTGTCGAATCATTTGAAAAACTCACTCCAAACAGAAATCACTCCAACCTCCTTAAAGAAATCTACAAGGATATTGAGAAGTTAGATCTCCTGATAGGCTGCCTAGCGGAGCAGCCTCGACCTGATGGCTTTGGGTTTGGCGAAACTGCCTTCAACCTTTTTCTTGCGATGGCAAGCAGGAGACTGCAAACCGATAGGTTTATGACGGATGACTACACACCTGACATTTATACTCCGGAGGGACTGAAGTGGATTCAAGACACCGACATGCGCAGTGTGCTCACGAGGGCATTTCCAGATATCGCCTGGATGAGTGATGTTTTGAGCAAAAGTGATAATGCCTTTTTCCCTTGGCCAATATATAATGAAAACCTTGCCGGGTAA

Transcript

rna-XM_068886635.1

CCGGAACTTAAAAACAATGACAGTTTTAATTTAAGTTGGCAAAATGAAGTCAGCGTCAAAGGCCAATCCTCGAAGCAAGGTGATAAGCTCCGTCCCTGAGTCCTAAGTCTTCAGAAAAAGCCAAAGAGGGTCGTCAAAACAACTCTATTCACGGTACACTTAGTTTCCAAGAGAAGAACCCGCGAAAACTGAATTCAAACGGAACAACTTATTGAATCGCAGGTTACAATGAGCGAAGCACAACAACTCTTCCTCAAACTCTCTCAGTTTGTTCACAATCTCCTTCAACAACTGCCCCATTGGTGGAACCTACCGATTGTCTTGATGCTGTTTTACCAGTTTCAACAGCGGAATTACCTGATGAGAAATAATCTTTTCGATAGCTACCCGTGTAATTTTTCTGGACCTAAATACGCCTGCCAGGACCCAGTTGTAGGTCACGTGTCTTTGGGTTGTTTCGTCAACAACAAGAATATACCATTTCCATATCTCTTCAAGAAAAATGGAATAACTAAAGAACAGTGCGTGCAGCATTGTAAAGAGATTAACTATCCGTACGCAGGATTCAACCAATGCGGGAAATGTTTCTGTGGAGAGAATCTCTTCATGCTGAAACGCTGCAAAAAACGACCCCGAAGATTTAAGCCGCGCTGCGGGACCTCTTCTCCTCCGACTGAAGTGTTTAGAACGATGTACTGCACAGAGAGAATGAAAAATGCAAGATCCCACGATGGAACCTGCAACGACTTGAATCAACCAGCCTCTGGAAGTCGGTTTTATCGGTTTGGGCGGAATGTAAATCGCACTAAGACGTTTGAGGACAAAGATCTTTTGGAACCATGCCCTCGAGAATTAAGCAGAAGACTTTTGACCAGAGAAGAATTTATTCCTGTCAAGCAACTAAACCTGTTTGCCGCCGCCTGGATCCAGTTTAACGTTCATGATTGGTTTGACCATGGCTCGGCAGATACCAGTCGCCGAATCAAGATAAAATTGAATCGAGATAATGATCCTGTTTACAAAGAGCATCGTGGGTGGATGAAAATTGCACGAACAAAGTCAGACAACTGTCGAAAGTTCTCGGACAAAGGCTCCCCAAAAACGTTCCAGAATGACGTGACACACTGGTGGGATGGTTCACAGTTGTATGGCAGCGACGAAGAAACAAATGCCAAGGTGCGAAGCTTTAAAGAAGGTAAACTGAAACTTGGTGAAGATGGCTTGCTTCCTGTTGATCCCAAAACTGGAATCGACATAACTGGTTTCAGCAAAAACTGGTGGGTTGGTTTAAGCCTCATGCATAATATATTTACCCGAGAACATAATACAATCTGTGATATGCTCAAAAGATATTATCCTGAATGGTCAGACCAGCAGTTATATGACAAAGCAAGGTTGATCAACGTTGCAGTCATCCTGAAAATTCACTCCATAGAATGGACCCCAGCAGTTTTAAACAACACTGCTTTGCGCGCTGGGCTCCGCTTGAACTTTGGCCTCAGTCCAGGCAAGGAAGTCTACGATTGGTTAAAGGCCCATAACATTAGTGTCCATTCAAGTGGAGCAGTTCTGACGTCGATTGTTGGCAAACCGAGTGAATTCCATGGCGTTCCATTCTCGCTAACAGAGGAGTTCGTTTCAGTCTACCGTATGCATCCTCTACTTCCAGATTATCTCCATATTGGCTCTTTTTCAGCAGGTCAAGGCACTGGTAGAACCTATCAGCTGCCAGAATATTCTTTCAGGGGAACTAGGGACGTTTTAGTGAACAACAGAATGGAAGATATCTTGTTTACGTTTGGTGTTGAACATCCTGGAGCACTGACTCTTCATAACTATCCAACGCACCTCATGAATTTGAAGCTACCAAACCATCAACAAAAGGGAGAGACTATTGACCTGGCAACTATCGAAATCTTGCGTGATCGAGAACGAGGCATCCCGCGATATAACGACTTCAGGAGGTTGACGAATCTCCGCCCTGTCGAATCATTTGAAAAACTCACTCCAAACAGAAATCACTCCAACCTCCTTAAAGAAATCTACAAGGATATTGAGAAGTTAGATCTCCTGATAGGCTGCCTAGCGGAGCAGCCTCGACCTGATGGCTTTGGGTTTGGCGAAACTGCCTTCAACCTTTTTCTTGCGATGGCAAGCAGGAGACTGCAAACCGATAGGTTTATGACGGATGACTACACACCTGACATTTATACTCCGGAGGGACTGAAGTGGATTCAAGACACCGACATGCGCAGTGTGCTCACGAGGGCATTTCCAGATATCGCCTGGATGAGTGATGTTTTGAGCAAAAGTGATAATGCCTTTTTCCCTTGGCCAATATATAATGAAAACCTTGCCGGGTAATGTTtcatttcaatttgaaaaaacttTGTGTACGTACGGTTGACGGGGGGAGATCATCATTTTACCGATGTGGGTTCTGGGCATGTTATCTATAATTCCCTAAGcggaaagagaaaataaaaagttaaatGC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9C9U3	Alpha-dioxygenase 2 OS=Arabidopsis thaliana OX=3702 GN=DOX2 PE=2 SV=1
A0A1S3ZX38	Alpha-dioxygenase PIOX OS=Nicotiana tabacum OX=4097 GN=PIOX PE=1 SV=1
Q2QRV3	Alpha-dioxygenase PIOX OS=Oryza sativa subsp. japonica OX=39947 GN=PIOX PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002351 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03098 all species →	An_peroxidase	Animal haem peroxidase	Domain	Interproscan
PF01822 all species →	WSC	WSC domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR034815 all species →	Family	Alpha-dioxygenase	Interproscan
IPR019791 all species →	Family	Haem peroxidase, animal-type	Interproscan
IPR002889 all species →	Domain	Carbohydrate-binding WSC	Interproscan
IPR037120 all species →	Homologous_superfamily	Haem peroxidase domain superfamily, animal type	Interproscan
IPR050783 all species →	Family	Oxylipin biosynthesis and metabolism	Interproscan
IPR010255 all species →	Homologous_superfamily	Haem peroxidase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11903 all species →	PROSTAGLANDIN G/H SYNTHASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0004666 all species →	Molecular Function	prostaglandin-endoperoxide synthase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016702 all species →	Molecular Function	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	Interproscan
GO:0019371 all species →	Biological Process	cyclooxygenase pathway	Interproscan
GO:0043005 all species →	Cellular Component	neuron projection	Interproscan
GO:0004601 all species →	Molecular Function	peroxidase activity	Interproscan
GO:0006979 all species →	Biological Process	response to oxidative stress	Interproscan
GO:0020037 all species →	Molecular Function	heme binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19511	PXDN, VPO1; peroxidase	EC:1.11.1.7	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068742736.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

26TPM > 0

1Conditions

12.6Max TPM

2.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	26	2.76	12.64

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	12.64
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	10.57
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	8.76
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	6.55
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	5.94
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	5.83
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	5.66
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	5.64
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	5.28
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	4.77
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	3.97
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	3.59
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	2.88
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	2.78
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	2.74
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	1.83
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	1.79
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	1.26
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	1.24
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	1.17
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.98
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	0.86
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	0.84
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	0.80
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	0.52
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	0.49
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	0.00
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.