Gene detail

Detailed information of XP_068742840.1 in Montipora capricornis

Genomic Location: chr3:68499853...68564395
NR annotation: XP_029188557.2, VPS10 domain-containing receptor SorCS1-like [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC138040984

ATGGCGTTTTGTGCCAGTGATCGTGTACGTTTTTGCCTTGTCTTGCTCTGTGCTATGTCATTAACATTCTCAGTTTCCAGTGCGATACGAATAGATGATATAATCCGTGGCACGGTTAAGCATATCCCCTTGAAAAGAAACCAGCCATATAAATTTGGTTTCTTTCGTGAGGCTGACTTCGAGAGGTTTGACAAGGAAATGGTCGAATTACACAATGACAGACTGAAGCGTAGTGTTGAAGATAGTGTTCAACAAAGCAACCATTCAATAATACACGAGTTTGAGCTCAAAGGGGATAACCACTCTGTGGCCTTCTTGCACTGGGCAGGAAAGAAGAGCTCGGTTATATATATTTACACTTGTGGAAAAATAAAGAATACTCAAAGTGATCACTTTCTCTGTGAAGATGCCTATTTCTGGAGGTCAAGTGACTATGGAAGCACATTTCACCGCAAGGAAAACCAATTCCAAGGAAAGAATGGAACAGTAACCATTAATAATGTTGATTTCTGCAACAGTAACAACAAAAAGGTTATTGTGAGTGCTCTTTCACCCAGTACATTATTCATTTCACTTGATCAAGGAAGTAATTTTATACAAGTTCCTGTGGGTTTTAAGCCACATGTGATTTCTTGTAATCCCCAGTCAGATCAGATGATCATTGGGCATGATGTTACTTCCGATGAGGTTCATTATTCAACTGATGGTGGAAGTAGGTGGAAACTTCTGGCCCAGAACGTTGTGAAGCATTCTTGGGGTTACGGGAGCAAGTCAGAGGTCATTTTAGAAGTCCAGACACACACTCCTTTGACCTCTGTGCTTAAGCATGCATACTTAAACCCAGACTCTGTGGAAGTCAAAACTTTTGACAAGGCACTTGGAACGTTCATGAAAGGAAGTTTTGAAGTTGCAGGCAGATACATGTTGGTTCAGAAACATTCAACAAACAAAGGATTGTATGTTTTCTACAAAGAAAACTCTAGCTCTCGTGCAACAAAGAACTTTTTCCAACGTGCACGTTTTCCTCTCCAACAAATAGAAGAGAAGGCATATAAAGTAGTTGATGCTTCTGAAAGTGAGCTTATGGTTGTTGTGAAGCATGGAAAAGGTTTTTACAATCTGTACACATCTGATGAGACTGGTGTCAAGTTTTCCCTCTCACTGGAACGTATCTTGAGTAACAGAACTCTTATTTGGGGCAAACCTGTGACCCTAGTGGACCTTCACAAGGTTCAGAGCCTAAATGGAACATACTTGGCAAATGTGGTTGTACGAAATAGATACGTGAGATCTGTGGTCACATACAACAAAGGGGGAAGTTGGCACCTTCTAAGAGCCCCATACCAGGACCATAATGGAAGGTCAACACACTGCTCCTTGCCTTACTGCTCTCTTCATATTCACATTGTATTGAGTCATTGGCGTTATTATATCCCTGGTGTGCTGTCTTCATCTTCTGCTGTGGGCATCATTGTTGCTCAAGGTAACTTGGGTACAAGACTTGGACAACGTTCAATTGGTGTCTTCATGTCTAATGATGGAGGTTTAACATGGACAAAAGAATTTGATCGCTTTTATGATTTTGTGATTGGTGATCATGGTGGAATTCTTGCAGCAGTTTCTCTTTGGTTTGGAACAAAAAAAGTTTGGTACAGTTGTACAGAGGGGAAAGAATGGAAGTCCATCCCTCTTGATAACCAAGTCAAAGTATATGGCATGGTAACTGAACCAGGAGAAACAAAACTTATCGTCAATTTGTTTGGTCAGTATGACAAAACGAATTTCCAGTGGCTCTCAGTAAAGCTGAATTTCACTACTGTTCTCAATCGAAAGTGTCAGCAAGAAAACTACACTCGTTGGTCTCCTAATGATGAGCGTGTTGGTTATCAGTGTTTGTTGGGTCAGCACATTGTATATCAGCGTCGCAAGTCAGGAGATTGTTGCTTTAATGGAGAAGAGTATGAAAGAGAAATAAATGTAACTGCTTGCACCTGTACAACTGATGATTTTGACTGTGACTTTGGGTATGAGGATCCTGATTTTGACGAAATATGTCGTCCAACTTCATATGTTGAACTCGTTCCTAATCCCTGCCCTGAGGGTAAAACGTACAAGCACAGTAGCGGGTACAGAAAAGTAGTTGGAGACCGTTGCGAAGGTGGTGTGGAGAATGCATTTAAGCCAAAGACCCGTTTTTGTCCTATAACGGTACCAGATGAACTGAGTATCCAGGTGATAGCAAAGCATAAGAGGGCTTTTGGGACATCTAGTAAAGTTATCTTCGCCCTTACCCAAAAGAAGGGCTCAACAAAAACCACACAGTACAGCTGGGATTTTGGAGATGGTAGCCCTCTATTTAACGCAACAGGCTTTGGTCACGCCAGAAGTGTGCCGCACGTTTTTAAAAGTAATGGTCACTATGTTGTCACGGTCAGGGCAGTCAACAAAGCTGGACAGGCTTCAATCAGTACTAGTGTTACTGTTTTGGATCCTATCAAATCAGTTGTTATTGATCCACCTTATGCTGTGGTTGTCGGTGAAGAAGCCTGGTTTAATGCAACATTTTACACCATTGAAGGGCCTGATCCAGAGCAGTACAAGCCATCTTATGGATATGTGCACTTCATGTGGACGTTTGACAACGTTTCTTTACCAACTCTGACGTGGGCGCACACTGTGTCACATGTGTTCTCAGCAACAGGGAAATTTCTGGTCGAGGTACAGGCTATAAGCCTTGTTAGCTCCGAAAGCAGCCATGTCTTGATCACTGTCTATGATGACCTTACCACGGTCCGTTTATCACTTGACGTTGTCTTGGATGCCGAAAATGCTGACACAAGAGAGTGGAGAACGTTTCTAGCTCAGCGTCTGCAAGCTTTTCTGAGTTACGAGTTGCTGGACATACAGCCAAGTCGTTTGGAAGTTGTCGTGTTGCCGGGAACGCCGACCAAAGCTGACGTTTCAATAACACCTGCTCCTACAAACACAAGCAAAACAAGAGATGAGATTGTTGCTCTGCTGAAAGAAGAAGTGGCTGAAGGAAAAGCGGAGATGGATTTAAGTCATATCACGGTGAAAATCACTTACGTGGAAAAGCTACCCGACAGAGTCATTGACGGATGCAAATCAGCACCGTGTAAAAATGGAGGAATCTGTAAAACCGACAATGGAACTTTCACATGCAAGTGCCATGCTGGTTTCACTGGACATCTCTGCGAGACAGATATTGACGAATGTAAATCACCTTCTCTGTGTAAAAATGGAGGGACGTGTGTGAACGAGCATGGAAGTTACACGTGCAACTGCAGTGCAGGTTTTACTGGAAAGCTTTGTGAGAAAGATATTGACGAATGTAAATCACCTTCTCCGTGTAAAAATGGAGGGACGTGTGTGAACGAGCATGGAAGTTACACGTGCAACTGCAGTGCAGGTTTCACTGGAAAGCTTTGTGAGAAAGATAGCGTTCATTAG

Transcript

rna-XM_068886739.1

CTCTAGGAAGTGCAATCATGGCGTTTTGTGCCAGTGATCGTGTACGTTTTTGCCTTGTCTTGCTCTGTGCTATGTCATTAACATTCTCAGTTTCCAGTGCGATACGAATAGATGATATAATCCGTGGCACGGTTAAGCATATCCCCTTGAAAAGAAACCAGCCATATAAATTTGGTTTCTTTCGTGAGGCTGACTTCGAGAGGTTTGACAAGGAAATGGTCGAATTACACAATGACAGACTGAAGCGTAGTGTTGAAGATAGTGTTCAACAAAGCAACCATTCAATAATACACGAGTTTGAGCTCAAAGGGGATAACCACTCTGTGGCCTTCTTGCACTGGGCAGGAAAGAAGAGCTCGGTTATATATATTTACACTTGTGGAAAAATAAAGAATACTCAAAGTGATCACTTTCTCTGTGAAGATGCCTATTTCTGGAGgTCAAGTGACTATGGAAGCACATTTCACCGCAAGGAAAACCAATTCCAAGGAAAGAATGGAACAGTAACCATTAATAATGTTGATTTCTGCAACAGTAACAACAAAAAGgtTATTGTGAGTGCTCTTTCACCCAGTACATTATTCATTTCACTTGATCAAGGAAGTAATTTTATACAAGTTCCTGTGGGTTTTAAGCCACATGTGATTTCTTGTAATCCCCAGTCAGATCAGATGATCATTGGGCATGATGTTACTTCCGATGAGGTTCATTATTCAACTGATGGTGGAAGTAGGTGGAAACTTCTGGCCCAGAACGTTGTGAAGCATTCTTGGGGTTACGGGAGCAAGTCAGAGGTCATTTTAGAAGTCCAGACACACACTCCTTTGACCTCTGTGCTTAAGCATGCATACTTAAACCCAGACTCTGTGGAAGTCAAAACTTTTGACAAGGCACTTGGAACGTTCATGAAAGGAAGTTTTGAAGTTGCAGGCAGATACATGTTGGTTCAGAAACATTCAACAAACAAAGGATTGTATGTTTTCTACAAAGAAAACTCTAGCTCTCGTGCAACAAAGAACTTTTTCCAACGTGCACGTTTTCCTCTCCAACAAATAGAAGAGAAGGCATATAAAGTAGTTGATGCTTCTGAAAGTGAGCTTATGGTTGTTGTGAAGCAtggaaaaggtttttacaaTCTGTACACATCTGATGAGACTGGTGTCAAGTTTTCCCTCTCACTGGAACGTATCTTGAGTAACAGAACTCTTATTTGGGGCAAACCTGTGACCCTAGTGGACCTTCACAAGGTTCAGAGCCTAAATGGAACATACTTGGCAAATGTGGTTGTACGAAATAGATACGTGAGATCTGTGGTCACATACAACAAAGGGGGAAGTTGGCACCTTCTAAGAGCCCCATACCAGGACCATAATGGAAGGTCAACACACTGCTCCTTGcctTACTGCTCTCTTCATATTCACATTGTATTGAGTCATTGGCGTTATTATATCCCTGGTGTGCTGTCTTCATCTTCTGCTGTGGGCATCATTGTTGCTCAAGGTAACTTGGGTACAAGACTTGGACAACGTTCAATTGGTGTCTTCATGTCTAATGATGGAGGTTTAACATGGACAAAAGAATTTGATCGCTTTTATGATTTTGTGATTGGTGATCATGGTGGAATTCTTGCAGCAGTTTCTCTTTGGTTTGGAACAAAAAAAGTTTGGTACAGTTGTACAGAGGGGAAAGAATGGAAGTCCATCCCTCTTGATAACCAAGTCAAAGTATATGGCATGGTAACTGAACCAGGAGAAACAAAACTTATCGTCAAttTGTTTGGTCAGTATGACAAAACGAATTTCCAGTGGCTCTCAGTAAAGCTGAATTTCACTACTGTTCTCAATCGAAAGTGTCAGCAAGAAAACTACACTCGTTGGTCTCCTAATGATGAGCGTGTTGGTTATCAGTGTTTGTTGGGTCAGCACATTGTATATCAGCGTCGCAAGTCAGGAGATTGTTGCTTTAATGGAGAAGAGtatgaaagagaaataaatgtaaCTGCTTGCACCTGTACAACTGATGATTTTGACTGTGACTTTGGGTATGAGGATCCTGATTTTGACGAAATATGTCGTCCAACTTCATATGTTGAACTCGTTCCTAATCCCTGCCCTGAGGGTAAAACGTACAAGCACAGTAGCGGGTACAGAAAAGTAGTTGGAGACCGTTGCGAAGGTGGTGTGGAGAATGCATTTAAGCCAAAGACCCGTTTTTGTCCTATAACGGTACCAGATGAACTGAGTATCCAGGTGATAGCAAAGCATAAGAGGGCTTTTGGGACATCTAGTAAAGTTATCTTCGCCCTTACCCAAAAGAAGGGCTCAACAAAAACCACACAGTACAGCTGGGATTTTGGAGATGGTAGCCCTCTATTTAACGCAACAGGCTTTGGTCACGCCAGAAGTGTGCCGCACGTTTTTAAAAGTAATGGTCACTATGTTGTCACGGTCAGGGCAGTCAACAAAGCTGGACAGGCTTCAATCAGTACTAGTGTTACTGTTTTGGATCCTATCAAATCAGTTGTTATTGATCCACCTTATGCTGTGGTTGTCGGTGAAGAAGCCTGGTTTAATGCAACATTTTACACCATTGAAGGGCCTGATCCAGAGCAGTACAAGCCATCTTATGGATATGTGCACTTCATGTGGACGTTTGACAACGTTTCTTTACCAACTCTGACGTGGGCGCACACTGTGTCACATGTGTTCTCAGCAACAGGGAAATTTCTGGTCGAGGTACAGGCTATAAGCCTTGTTAGCTCCGAAAGCAGCCATGTCTTGATCACTGTCTATGATGACCTTACCACGGTCCGTTTATCACTTGACGTTGTCTTGGATGCCGAAAATGCTGACACAAGAGAGTGGAGAACGTTTCTAGCTCAGCGTCTGCAAGCTTTTCTGAGTTACGAGTTGCTGGACATACAGCCAAGTCGTTTGGAAGTTGTCGTGTTGCCGGGAACGCCGAccaaagctgacgtttcaataACACCTGCTCCTACAAACACAAGCAAAACAAGAGATGAGATTGTTGCTCTGCTGAAAGAAGAAGTGGCTGAAGGAAAAGCGGAGATGGATTTAAGTCATATCACGGTGAAAATCACTTACGTGGAAAAGCTACCCGACAGAGTCATTGACGGATGCAAATCAGCACCGTGTAAAAATGGAGGAATCTGTAAAACCGACAATGGAACTTTCACATGCAAGTGCCATGCTGGTTTCACTGGACATCTCTGCGAGACAGATATTGACGAATGTAAATCAccttctctgtgtaaaaatggaGGGACGTGTGTGAACGAGCATGGAAGTTACACGTGCAACTGCAGTGCAGGTTTTACTGGAAAGCTTTGTGAGAAAGATATTGACGAATGTAAATCACCTTCTCCGTGTAAAAATGGAGGGACGTGTGTGAACGAGCATGGAAGTTACACGTGCAACTGCAGTGCAGGTTTCACTGGAAAGCTTTGTGAGAAAGATAGCGTTCATTAGCGGGAGCTGCCGGAAAGAATCAATGACAAACCCCCTTTGTCAGTGGCGGTGAGTGAGGAAGATCCTTCAAAGAATTGAAGAAGCTTGCGATaagcaagaagaagagaaaactcgaAGAACGTGATGCGGTTGCAGTAAAGTGTGAAAGGTGAATTGATTGCCAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9EPR5	VPS10 domain-containing receptor SorCS2 OS=Mus musculus OX=10090 GN=Sorcs2 PE=1 SV=2
Q96PQ0	VPS10 domain-containing receptor SorCS2 OS=Homo sapiens OX=9606 GN=SORCS2 PE=1 SV=3
Q98930	Sortilin-related receptor (Fragment) OS=Gallus gallus OX=9031 GN=SORL1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000638 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07645 all species →	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan
PF18911 all species →	PKD_4	PKD domain	Domain	Interproscan
PF15901 all species →	Sortilin_C	Sortilin, neurotensin receptor 3, C-terminal	Domain	Interproscan
PF15902 all species →	Sortilin-Vps10	Sortilin, neurotensin receptor 3,	Repeat	Interproscan
PF00008 all species →	EGF	EGF-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR009030 all species →	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR049883 all species →	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR031777 all species →	Domain	Sortilin, C-terminal	Interproscan
IPR031778 all species →	Domain	Sortilin, N-terminal	Interproscan
IPR035986 all species →	Homologous_superfamily	PKD domain superfamily	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR022409 all species →	Domain	PKD/Chitinase domain	Interproscan
IPR006581 all species →	Domain	VPS10	Interproscan
IPR050310 all species →	Family	VPS10-related sortilin family receptors	Interproscan
IPR000601 all species →	Domain	PKD domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12106 all species →	SORTILIN RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0006892 all species →	Biological Process	post-Golgi vesicle-mediated transport	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_068742840.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068742840.1 across 36 RNA-seq samples of Montipora capricornis. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

0TPM > 0

1Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.